6RD3 | pdb_00006rd3

Crystal structure of the wild type OmpK36 from Klebsiella pneumonia

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d6rd3f1	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Porins	Porin	automated matches	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
F	d6rd3f2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
E	d6rd3e1	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Porins	Porin	automated matches	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
E	d6rd3e2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
D	d6rd3d1	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Porins	Porin	automated matches	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
D	d6rd3d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
C	d6rd3c1	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Porins	Porin	automated matches	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
C	d6rd3c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
B	d6rd3b1	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Porins	Porin	automated matches	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
B	d6rd3b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
A	d6rd3a1	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Porins	Porin	automated matches	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
A	d6rd3a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Metallophos	e6rd3F1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (develop294)
E	Metallophos	e6rd3E1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (develop294)
D	Metallophos	e6rd3D1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (develop294)
C	Metallophos	e6rd3C1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (develop294)
B	Metallophos	e6rd3B1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (develop294)
A	Metallophos	e6rd3A1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
E	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
D	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
C	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
B	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
A	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	OmpK36	wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity cation binding ion binding binding metal ion binding small molecule binding	transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport cellular process establishment of localization	protein-containing complex cellular anatomical structure membrane pore complex membrane protein complex cell periphery cell outer membrane external encapsulating structure cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR050298	Gram-negative bacterial outer membrane porin	Family
A, B, C, D, E A, B, C, D, E, F	IPR023614	Porin domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001702	Porin, Gram-negative type	Family
A, B, C, D, E A, B, C, D, E, F	IPR013793	Porin, Gram-negative type, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR001897	Porin, gammaproteobacterial	Family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Beta-Barrel Membrane Proteins: Porins and Relatives	OmpK36 osmoporin, wild-type

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.