6RB9 | pdb_00006rb9

The pore structure of Clostridium perfringens epsilon toxin


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8101591 3000278 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8101591 3000278 SCOP2B (2022-06-29)
FSCOP2 FamilyETX/MTX2 8101590 4003009 SCOP2 (2022-06-29)
FSCOP2 SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8101591 3000278 SCOP2 (2022-06-29)
GSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8101591 3000278 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8101591 3000278 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8101591 3000278 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8101591 3000278 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DCbiA, ArsA_ATPasee6rb9D1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: CbiA, ArsA_ATPaseECOD (develop294)
ECbiA, ArsA_ATPasee6rb9E1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: CbiA, ArsA_ATPaseECOD (develop294)
FCbiA, ArsA_ATPasee6rb9F1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: CbiA, ArsA_ATPaseECOD (develop294)
GCbiA, ArsA_ATPasee6rb9G1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: CbiA, ArsA_ATPaseECOD (develop294)
CCbiA, ArsA_ATPasee6rb9C1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: CbiA, ArsA_ATPaseECOD (develop294)
BCbiA, ArsA_ATPasee6rb9B1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: CbiA, ArsA_ATPaseECOD (develop294)
ACbiA, ArsA_ATPasee6rb9A1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: CbiA, ArsA_ATPaseECOD (develop294)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR004991Aerolysin-like toxinFamily
A, B, C, D, E
IPR009209Epsilon toxinFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D, E
OPMTransmembraneBeta-barrel transmembranePore-forming beta-sheet toxinsChannel-forming epsilon-toxin

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM