6RAO | pdb_00006rao

Cryo-EM structure of the anti-feeding prophage (AFP) baseplate, 6-fold symmetrised

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth E]	Phage_sheath_1C	e6raoE2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
G [auth E]	Phage_sheath_1	e6raoE1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
F [auth H]	GPW_gp25	e6raoH1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: GPW_gp25	ECOD (1.6)
E [auth F]	UNK_F_TYPE	e6raoF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
D	Phage_sheath_1C	e6raoD1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
D	Phage_sheath_1	e6raoD2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
C	Phage_sheath_1C	e6raoC1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
C	Phage_sheath_1	e6raoC2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
B	UNK_F_TYPE	e6raoB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6raoA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J	Afp12	-	-	-
I	Afp11	-	-	-
H [auth G]	Afp7	-	-	-
G [auth E]	Afp4	-	-	-
F [auth H]	Afp9	-	-	-
E [auth F]	Afp5	structural molecule activity	-	-
D	Afp3	-	-	-
C	Afp2	-	-	-
A, B	Afp1	structural molecule activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
H [auth G]	IPR045361	Contractile injection system tube protein, N-terminal domain	Domain
G [auth E]	IPR052042	Tail sheath structural protein	Family
F [auth H]	IPR007048	IraD/Gp25-like	Domain
E [auth F]	IPR011747	Conserved hypothetical protein CHP02241	Family
E [auth F]	IPR010667	Bacteriophage T4, Gp19, tail tube	Family
D	IPR052042	Tail sheath structural protein	Family
D	IPR020287	Tail sheath protein, C-terminal domain	Domain
D	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
C	IPR052042	Tail sheath structural protein	Family
C	IPR020287	Tail sheath protein, C-terminal domain	Domain
C	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
A, B	IPR011747	Conserved hypothetical protein CHP02241	Family
A, B	IPR010667	Bacteriophage T4, Gp19, tail tube	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.