6R8F | pdb_00006r8f

Cryo-EM structure of the Human BRISC-SHMT2 complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth L]SCOP2B SuperfamilyPLP-dependent transferases 8036728 3000954 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilyPLP-dependent transferases 8036728 3000954 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth E]I_LWEQe6r8fE01 A: a/b three-layered sandwichesX: Rossmann-likeH: all-alpha NTP pyrophosphatasesT: Hypothetical protein AF_0060F: I_LWEQECOD (v294.1)
F [auth L]Sigma70_r2,Sigma70_nere6r8fL1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (v294.1)
C [auth K]e6r8fK1 A: a/b three-layered sandwichesX: P-loop domains-likeH: a+b domain in acetyl-CoA synthetase-like proteinsT: a+b domain in acetyl-CoA synthetase-like proteinsF:ECOD (v294.1)
E [auth D]MPN_2A_DUB_likee6r8fD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MPN_2A_DUB_likeECOD (v294.1)
E [auth D]Sigma70_r2,Sigma70_nere6r8fD2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (v294.1)
Be6r8fB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: a+b domain in acetyl-CoA synthetase-like proteinsT: a+b domain in acetyl-CoA synthetase-like proteinsF:ECOD (v294.1)
D [auth C]MPN_2A_DUB_likee6r8fC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MPN_2A_DUB_likeECOD (v294.1)
Ae6r8fA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: a+b domain in acetyl-CoA synthetase-like proteinsT: a+b domain in acetyl-CoA synthetase-like proteinsF:ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth E],
H [auth G]
PF06113Brain and reproductive organ-expressed protein (BRE) (BRE)Brain and reproductive organ-expressed protein (BRE)- Family
C [auth K],
F [auth L]
PF00464Serine hydroxymethyltransferase (SHMT)Serine hydroxymethyltransferaseDomain
B,
E [auth D]
PF21125BRCA1-A complex subunit Abraxas 1 MPN domain (MPN_2A_DUB_like)BRCA1-A complex subunit Abraxas 1 MPN domainThis entry represents the MPN domain from the Abraxas protein [1-3]. Abraxas is a component of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked polyubiquitin, leaving the last ubiquitin chain attached to its substra ...This entry represents the MPN domain from the Abraxas protein [1-3]. Abraxas is a component of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked polyubiquitin, leaving the last ubiquitin chain attached to its substrates.
Domain
A,
D [auth C]
PF18110BRCC36 C-terminal helical domain (BRCC36_C)BRCC36 C-terminal helical domainThis is the C-terminal domain of BRCC36, a Zn2+ dependent deubiquitinating enzyme, present in Camponotus floridanus. BRCC36 hydrolyzes lysine linked ubiquitin chains as part of macromolecular complexes that participate in either interferon signalling ...This is the C-terminal domain of BRCC36, a Zn2+ dependent deubiquitinating enzyme, present in Camponotus floridanus. BRCC36 hydrolyzes lysine linked ubiquitin chains as part of macromolecular complexes that participate in either interferon signalling or DNA-damage recognition. The domain consists of 2 non canonical helices. The domain interacts hydrophobically with helices alpha 4 and alpha 5 of KIAA0157 in the form of a coiled coil helical bundle. This interaction helps establish the association of BRCC36 with KIAA0157, a pseudo-DUB MPN- protein that is essential for the activity of BRCC36 [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth E],
H [auth G]
BRISC and BRCA1-A complex member 2,BRCC45 (BRE, BRISC and BRCA1-A complex member 2)
C [auth K],
F [auth L]
Serine hydroxymethyltransferase, mitochondrial
B,
E [auth D]
BRISC complex subunit Abraxas 2
A,
D [auth C]
Lys-63-specific deubiquitinase BRCC36