Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00603e6qpfA2 A: a+b complex topologyX: Polymerase acidic protein (From Topology)H: Polymerase acidic protein (From Topology)T: Polymerase acidic proteinF: PF00603ECOD (1.6)
APF00603e6qpfA1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF00603ECOD (1.6)
DPF00603e6qpfD1 A: a+b complex topologyX: Polymerase acidic protein (From Topology)H: Polymerase acidic protein (From Topology)T: Polymerase acidic proteinF: PF00603ECOD (1.6)
DPF00603e6qpfD2 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF00603ECOD (1.6)
GPF00603e6qpfG1 A: a+b complex topologyX: Polymerase acidic protein (From Topology)H: Polymerase acidic protein (From Topology)T: Polymerase acidic proteinF: PF00603ECOD (1.6)
GPF00603e6qpfG2 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF00603ECOD (1.6)
JPF00603e6qpfJ1 A: a+b complex topologyX: Polymerase acidic protein (From Topology)H: Polymerase acidic protein (From Topology)T: Polymerase acidic proteinF: PF00603ECOD (1.6)
JPF00603e6qpfJ2 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF00603ECOD (1.6)
BPF00602e6qpfB3 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: PF00602ECOD (1.6)
BPF00602e6qpfB2 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF00602ECOD (1.6)
BPF00602e6qpfB1 A: extended segmentsX: RNA polymerase PB1 C-terminal fragment (From Topology)H: RNA polymerase PB1 C-terminal fragment (From Topology)T: RNA polymerase PB1 C-terminal fragmentF: PF00602ECOD (1.6)
EPF00602e6qpfE3 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: PF00602ECOD (1.6)
EPF00602e6qpfE1 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF00602ECOD (1.6)
EPF00602e6qpfE2 A: extended segmentsX: RNA polymerase PB1 C-terminal fragment (From Topology)H: RNA polymerase PB1 C-terminal fragment (From Topology)T: RNA polymerase PB1 C-terminal fragmentF: PF00602ECOD (1.6)
HPF00602e6qpfH1 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: PF00602ECOD (1.6)
HPF00602e6qpfH2 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF00602ECOD (1.6)
HPF00602e6qpfH3 A: extended segmentsX: RNA polymerase PB1 C-terminal fragment (From Topology)H: RNA polymerase PB1 C-terminal fragment (From Topology)T: RNA polymerase PB1 C-terminal fragmentF: PF00602ECOD (1.6)
KPF00602e6qpfK1 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: PF00602ECOD (1.6)
KPF00602e6qpfK2 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF00602ECOD (1.6)
KPF00602e6qpfK3 A: extended segmentsX: RNA polymerase PB1 C-terminal fragment (From Topology)H: RNA polymerase PB1 C-terminal fragment (From Topology)T: RNA polymerase PB1 C-terminal fragmentF: PF00602ECOD (1.6)
CPF00604,PF20951e6qpfC4 A: alpha arraysX: PB2 '627' domain-related (From Homology)H: PB2 '627' domain-relatedT: Polymerase basic protein 2 (PB2) '627' domainF: PF00604,PF20951ECOD (1.6)
CPF20950e6qpfC5 A: alpha arraysX: Helical domain in PB2 (From Topology)H: Helical domain in PB2 (From Topology)T: Helical domain in PB2F: PF20950ECOD (1.6)
CPF20952e6qpfC2 A: a+b two layersX: PB2 C-terminal domain-like (From Topology)H: PB2 C-terminal domain-like (From Topology)T: PB2 C-terminal domain-likeF: PF20952ECOD (1.6)
CPF20948e6qpfC6 A: a+b two layersX: a+b domain in PB2 (From Topology)H: a+b domain in PB2 (From Topology)T: a+b domain in PB2F: PF20948ECOD (1.6)
CPF00604e6qpfC7 A: a+b three layersX: Polymerase basic protein 2 cap-binding domain (From Topology)H: Polymerase basic protein 2 cap-binding domain (From Topology)T: Polymerase basic protein 2 cap-binding domainF: PF00604ECOD (1.6)
CPF20949e6qpfC3 A: a+b complex topologyX: Middle domain in PB2 (From Topology)H: Middle domain in PB2 (From Topology)T: Middle domain in PB2F: PF20949ECOD (1.6)
CPF20947e6qpfC1 A: extended segmentsX: RNA polymerase PB2 N-terminal fragment (From Topology)H: RNA polymerase PB2 N-terminal fragment (From Topology)T: RNA polymerase PB2 N-terminal fragmentF: PF20947ECOD (1.6)
FPF00604,PF20951e6qpfF4 A: alpha arraysX: PB2 '627' domain-related (From Homology)H: PB2 '627' domain-relatedT: Polymerase basic protein 2 (PB2) '627' domainF: PF00604,PF20951ECOD (1.6)
FPF20950e6qpfF2 A: alpha arraysX: Helical domain in PB2 (From Topology)H: Helical domain in PB2 (From Topology)T: Helical domain in PB2F: PF20950ECOD (1.6)
FPF20952e6qpfF6 A: a+b two layersX: PB2 C-terminal domain-like (From Topology)H: PB2 C-terminal domain-like (From Topology)T: PB2 C-terminal domain-likeF: PF20952ECOD (1.6)
FPF20948e6qpfF1 A: a+b two layersX: a+b domain in PB2 (From Topology)H: a+b domain in PB2 (From Topology)T: a+b domain in PB2F: PF20948ECOD (1.6)
FPF00604e6qpfF5 A: a+b three layersX: Polymerase basic protein 2 cap-binding domain (From Topology)H: Polymerase basic protein 2 cap-binding domain (From Topology)T: Polymerase basic protein 2 cap-binding domainF: PF00604ECOD (1.6)
FPF20949e6qpfF7 A: a+b complex topologyX: Middle domain in PB2 (From Topology)H: Middle domain in PB2 (From Topology)T: Middle domain in PB2F: PF20949ECOD (1.6)
FPF20947e6qpfF3 A: extended segmentsX: RNA polymerase PB2 N-terminal fragment (From Topology)H: RNA polymerase PB2 N-terminal fragment (From Topology)T: RNA polymerase PB2 N-terminal fragmentF: PF20947ECOD (1.6)
IPF00604,PF20951e6qpfI6 A: alpha arraysX: PB2 '627' domain-related (From Homology)H: PB2 '627' domain-relatedT: Polymerase basic protein 2 (PB2) '627' domainF: PF00604,PF20951ECOD (1.6)
IPF20950e6qpfI3 A: alpha arraysX: Helical domain in PB2 (From Topology)H: Helical domain in PB2 (From Topology)T: Helical domain in PB2F: PF20950ECOD (1.6)
IPF20952e6qpfI2 A: a+b two layersX: PB2 C-terminal domain-like (From Topology)H: PB2 C-terminal domain-like (From Topology)T: PB2 C-terminal domain-likeF: PF20952ECOD (1.6)
IPF20948e6qpfI5 A: a+b two layersX: a+b domain in PB2 (From Topology)H: a+b domain in PB2 (From Topology)T: a+b domain in PB2F: PF20948ECOD (1.6)
IPF00604e6qpfI7 A: a+b three layersX: Polymerase basic protein 2 cap-binding domain (From Topology)H: Polymerase basic protein 2 cap-binding domain (From Topology)T: Polymerase basic protein 2 cap-binding domainF: PF00604ECOD (1.6)
IPF20949e6qpfI4 A: a+b complex topologyX: Middle domain in PB2 (From Topology)H: Middle domain in PB2 (From Topology)T: Middle domain in PB2F: PF20949ECOD (1.6)
IPF20947e6qpfI1 A: extended segmentsX: RNA polymerase PB2 N-terminal fragment (From Topology)H: RNA polymerase PB2 N-terminal fragment (From Topology)T: RNA polymerase PB2 N-terminal fragmentF: PF20947ECOD (1.6)
LPF00604,PF20951e6qpfL2 A: alpha arraysX: PB2 '627' domain-related (From Homology)H: PB2 '627' domain-relatedT: Polymerase basic protein 2 (PB2) '627' domainF: PF00604,PF20951ECOD (1.6)
LPF20950e6qpfL1 A: alpha arraysX: Helical domain in PB2 (From Topology)H: Helical domain in PB2 (From Topology)T: Helical domain in PB2F: PF20950ECOD (1.6)
LPF20952e6qpfL4 A: a+b two layersX: PB2 C-terminal domain-like (From Topology)H: PB2 C-terminal domain-like (From Topology)T: PB2 C-terminal domain-likeF: PF20952ECOD (1.6)
LPF20948e6qpfL6 A: a+b two layersX: a+b domain in PB2 (From Topology)H: a+b domain in PB2 (From Topology)T: a+b domain in PB2F: PF20948ECOD (1.6)
LPF00604e6qpfL3 A: a+b three layersX: Polymerase basic protein 2 cap-binding domain (From Topology)H: Polymerase basic protein 2 cap-binding domain (From Topology)T: Polymerase basic protein 2 cap-binding domainF: PF00604ECOD (1.6)
LPF20949e6qpfL7 A: a+b complex topologyX: Middle domain in PB2 (From Topology)H: Middle domain in PB2 (From Topology)T: Middle domain in PB2F: PF20949ECOD (1.6)
LPF20947e6qpfL5 A: extended segmentsX: RNA polymerase PB2 N-terminal fragment (From Topology)H: RNA polymerase PB2 N-terminal fragment (From Topology)T: RNA polymerase PB2 N-terminal fragmentF: PF20947ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, D, G, J
PF00603Influenza RNA-dependent RNA polymerase subunit PA (Flu_PA)Influenza RNA-dependent RNA polymerase subunit PA- Family
B, E, H, K
PF00602Influenza RNA-dependent RNA polymerase subunit PB1 (Flu_PB1)Influenza RNA-dependent RNA polymerase subunit PB1- Family
C, F, I, L
PF20948Influenza RNA polymerase PB2 second domain (Flu_PB2_2nd)Influenza RNA polymerase PB2 second domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the domain of the Flu PB protein that follows the N-terminal extended region.
Domain
C, F, I, L
PF00604Influenza RNA polymerase PB2 CAP binding domain (Flu_PB2_5th)Influenza RNA polymerase PB2 CAP binding domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the CAP binding domain [2].
Domain
C, F, I, L
PF20947Influenza RNA polymerase PB2 N-terminal region (Flu_PB2_1st)Influenza RNA polymerase PB2 N-terminal region- Family
C, F, I, L
PF20949Influenza RNA polymerase PB2 middle domain (Flu_PB2_3rd)Influenza RNA polymerase PB2 middle domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the middle domain in Flu PB2 protein.
Domain
C, F, I, L
PF20950Influenza RNA polymerase PB2 helical domain (Flu_PB2_4th)Influenza RNA polymerase PB2 helical domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the helical domain of Flu PB2 protein.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, D, G, J
Polymerase acidic protein
B, E, H, K
RNA-directed RNA polymerase catalytic subunit
C, F, I, L
Polymerase basic protein 2