6QCM | pdb_00006qcm

Cryo em structure of the Listeria stressosome

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
AB [auth g]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
BB [auth h]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
CB [auth i]	SCOP2 Family	Anti-sigma factor antagonist SpoIIaa	8100355	4003567	SCOP2 (2022-06-29)
CB [auth i]	SCOP2 Superfamily	SpoIIaa-like	8100356	3001065	SCOP2 (2022-06-29)
DB [auth j]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
KA [auth A]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
LA [auth B]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
MA [auth C]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
NA [auth D]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
OA [auth I]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
PA [auth J]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
QA [auth N]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
RA [auth O]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
SA [auth R]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
TA [auth S]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
UA [auth a]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
VA [auth b]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
WA [auth c]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
XA [auth d]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
YA [auth e]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
ZA [auth f]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth AB]	IstB_IS21	e6qcmAB01	A: a/b three-layered sandwiches	X: Rossmann-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: IstB_IS21	ECOD (v294.1)
C [auth CB]	IstB_IS21	e6qcmCB01	A: a/b three-layered sandwiches	X: Rossmann-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: IstB_IS21	ECOD (v294.1)
AB [auth g]	ubiquitin	e6qcmg1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
BB [auth h]	ubiquitin	e6qcmh1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
CB [auth i]	ubiquitin	e6qcmi1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
DB [auth j]	ubiquitin	e6qcmj1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
KA [auth A]	ubiquitin	e6qcmA1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
LA [auth B]	ubiquitin	e6qcmB1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
MA [auth C]	ubiquitin	e6qcmC1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
NA [auth D]	ubiquitin	e6qcmD1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
OA [auth I]	ubiquitin	e6qcmI1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
PA [auth J]	ubiquitin	e6qcmJ1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
QA [auth N]	ubiquitin	e6qcmN1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
RA [auth O]	ubiquitin	e6qcmO1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
SA [auth R]	ubiquitin	e6qcmR1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
TA [auth S]	ubiquitin	e6qcmS1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
UA [auth a]	ubiquitin	e6qcma1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
VA [auth b]	ubiquitin	e6qcmb1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
WA [auth c]	ubiquitin	e6qcmc1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
XA [auth d]	ubiquitin	e6qcmd1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
YA [auth e]	ubiquitin	e6qcme1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
ZA [auth f]	ubiquitin	e6qcmf1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
EB [auth AD]	ubiquitin	e6qcmAD1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
FB [auth CD]	IstB_IS21	e6qcmCD01	A: a/b three-layered sandwiches	X: Rossmann-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: IstB_IS21	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	PF01740	STAS domain (STAS)	STAS domain	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding ...	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function [2].	Domain
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	PF01740	STAS domain (STAS)	STAS domain	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding ...	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function [2].	Domain
AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], LA [auth B], MA [auth C], NA [auth D], OA [auth I], PA [auth J], QA [auth N], RA [auth O], SA [auth R], TA [auth S], UA [auth a], VA [auth b], WA [auth c], XA [auth d], YA [auth e], ZA [auth f]	PF01740	STAS domain (STAS)	STAS domain	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding ...	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function [2].	Domain
EB [auth AD]	PF01740	STAS domain (STAS)	STAS domain	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding ...	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function [2].	Domain
FB [auth CD], GB [auth FD], HB [auth HD]	PF01740	STAS domain (STAS)	STAS domain	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding ...	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	RsbR protein	oxygen binding binding small molecule binding tetrapyrrole binding heme binding	-	-
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	RsbR protein	oxygen binding binding small molecule binding tetrapyrrole binding heme binding	-	-
AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], LA [auth B], MA [auth C], NA [auth D], OA [auth I], PA [auth J], QA [auth N], RA [auth O], SA [auth R], TA [auth S], UA [auth a], VA [auth b], WA [auth c], XA [auth d], YA [auth e], ZA [auth f]	RsbS protein	-	-	-
EB [auth AD]	RsbR protein,RsbR protein	oxygen binding binding small molecule binding tetrapyrrole binding heme binding	-	-
FB [auth CD], GB [auth FD], HB [auth HD]	RsbR protein	oxygen binding binding small molecule binding tetrapyrrole binding heme binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	IPR036513	STAS domain superfamily	Homologous Superfamily
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	IPR014792	RsbS co-antagonist protein RsbRA N-terminal domain	Domain
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	IPR002645	STAS domain	Domain
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	IPR012292	Globin/Protoglobin	Homologous Superfamily
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	IPR051932	Bacterial Stress Response Regulators	Family
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	IPR036513	STAS domain superfamily	Homologous Superfamily
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	IPR014792	RsbS co-antagonist protein RsbRA N-terminal domain	Domain
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	IPR002645	STAS domain	Domain
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	IPR012292	Globin/Protoglobin	Homologous Superfamily
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	IPR051932	Bacterial Stress Response Regulators	Family
AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], LA [auth B], MA [auth C], NA [auth D], OA [auth I], PA [auth J], QA [auth N], RA [auth O], SA [auth R], TA [auth S], UA [auth a], VA [auth b], WA [auth c], XA [auth d], YA [auth e], ZA [auth f]	IPR036513	STAS domain superfamily	Homologous Superfamily
AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], LA [auth B], MA [auth C], NA [auth D], OA [auth I], PA [auth J], QA [auth N], RA [auth O], SA [auth R], TA [auth S], UA [auth a], VA [auth b], WA [auth c], XA [auth d], YA [auth e], ZA [auth f]	IPR002645	STAS domain	Domain
AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], LA [auth B], MA [auth C], NA [auth D], OA [auth I], PA [auth J], QA [auth N], RA [auth O], SA [auth R], TA [auth S], UA [auth a], VA [auth b], WA [auth c], XA [auth d], YA [auth e], ZA [auth f]	IPR051932	Bacterial Stress Response Regulators	Family
EB [auth AD]	IPR036513	STAS domain superfamily	Homologous Superfamily
EB [auth AD]	IPR014792	RsbS co-antagonist protein RsbRA N-terminal domain	Domain
EB [auth AD]	IPR002645	STAS domain	Domain
EB [auth AD]	IPR012292	Globin/Protoglobin	Homologous Superfamily
EB [auth AD]	IPR051932	Bacterial Stress Response Regulators	Family
FB [auth CD], GB [auth FD], HB [auth HD]	IPR036513	STAS domain superfamily	Homologous Superfamily
FB [auth CD], GB [auth FD], HB [auth HD]	IPR014792	RsbS co-antagonist protein RsbRA N-terminal domain	Domain
FB [auth CD], GB [auth FD], HB [auth HD]	IPR002645	STAS domain	Domain
FB [auth CD], GB [auth FD], HB [auth HD]	IPR012292	Globin/Protoglobin	Homologous Superfamily
FB [auth CD], GB [auth FD], HB [auth HD]	IPR051932	Bacterial Stress Response Regulators	Family