6Q9D

CI Peripheral Arm focused refinement from Ovine respiratory SC I+III2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth S4]SCOP2B SuperfamilyNADH-ubiquinone oxidoreductase-like8053980 3002258 SCOP2B (2022-06-29)
B [auth V2]SCOP2B SuperfamilyThioredoxin-like8100908 3000031 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth S7]PF01058e6q9dS71 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: PF01058ECOD (1.6)
A [auth V1]PF10589e6q9dV13 A: alpha bundlesX: Bromodomain-likeH: Nqo1C-terminal domain-like (From Topology)T: Nqo1C-terminal domain-likeF: PF10589ECOD (1.6)
A [auth V1]PF22461e6q9dV12 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Nqo1 middle domain-likeF: PF22461ECOD (1.6)
A [auth V1]PF01512e6q9dV11 A: a/b three-layered sandwichesX: Nqo1 FMN-binding domain-like (From Topology)H: Nqo1 FMN-binding domain-like (From Topology)T: Nqo1 FMN-binding domain-likeF: PF01512ECOD (1.6)
J [auth S4]PF04800e6q9dS41 A: a+b two layersX: Putative oxidoreductase (From Topology)H: Putative oxidoreductase (From Topology)T: Putative oxidoreductaseF: PF04800ECOD (1.6)
K [auth A9]PF01370e6q9dA91 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF01370ECOD (1.6)
L [auth A2]PF05047e6q9dA21 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF05047ECOD (1.6)
M [auth A5]PF04716e6q9dA51 A: extended segmentsX: FATC domain (From Topology)H: FATC domain (From Topology)T: FATC domainF: PF04716ECOD (1.6)
N [auth A6]PF05347e6q9dA61 A: alpha bundlesX: LYR protein (From Topology)H: LYR protein (From Topology)T: LYR proteinF: PF05347ECOD (1.6)
P [auth AL]PF05071e6q9dAL1 A: a+b three layersX: Mitochondrial complex I, B17.2 subunit (From Topology)H: Mitochondrial complex I, B17.2 subunit (From Topology)T: Mitochondrial complex I, B17.2 subunitF: PF05071ECOD (1.6)
Q [auth AA]PF00550e6q9dAA1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: PF00550ECOD (1.6)
B [auth V2]PF01257e6q9dV21 A: alpha bundlesX: NQO2 helical bundle domain (From Topology)H: NQO2 helical bundle domain (From Topology)T: NQO2 helical bundle domainF: PF01257ECOD (1.6)
B [auth V2]PF01257e6q9dV22 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF01257ECOD (1.6)
C [auth S1]PF22117e6q9dS11 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF22117ECOD (1.6)
C [auth S1]PF13510e6q9dS12 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF13510ECOD (1.6)
C [auth S1]PF22151e6q9dS15 A: a+b two layersX: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)T: Formate dehydrogenase/DMSO reductase, domain 1F: PF22151ECOD (1.6)
C [auth S1]PF00384e6q9dS13 A: a/b three-layered sandwichesX: Rossmann-likeH: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)T: Formate dehydrogenase/DMSO reductase, domains 2 and 3F: PF00384ECOD (1.6)
C [auth S1]PF00384,PF09326e6q9dS14 A: a/b three-layered sandwichesX: Rossmann-likeH: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)T: Formate dehydrogenase/DMSO reductase, domains 2 and 3F: PF00384,PF09326ECOD (1.6)
C [auth S1]PF10588e6q9dS16 A: extended segmentsX: iron-sulfur center-binding helical hairpin (From Topology)H: iron-sulfur center-binding helical hairpin (From Topology)T: iron-sulfur center-binding helical hairpinF: PF10588ECOD (1.6)
D [auth S2]PF00346e6q9dS22 A: alpha complex topologyX: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)T: alpha-helical domain in nickel-iron hydrogenase, large subunitF: PF00346ECOD (1.6)
D [auth S2]PF00346e6q9dS21 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)T: Ni-Fe binding domain in nickel-iron hydrogenase large subunitF: PF00346ECOD (1.6)
E [auth S3]PF00329e6q9dS31 A: a+b two layersX: Nqo5-likeH: Nqo5-like (From Topology)T: Nqo5-likeF: PF00329ECOD (1.6)
G [auth S8]PF00037e6q9dS81 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
I [auth S6]PF10276e6q9dS61 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Cytochrome c oxidase Subunit FF: PF10276ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth V1]PF10531SLBB domain (SLBB)SLBB domain- Domain
A [auth V1]PF01512Respiratory-chain NADH dehydrogenase 51 Kd subunit (Complex1_51K)Respiratory-chain NADH dehydrogenase 51 Kd subunit- Family
A [auth V1]PF10589NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S)NADH-ubiquinone oxidoreductase-F iron-sulfur binding region- Domain
J [auth S4]PF04800NADH dehydrogenase ubiquinone Fe-S protein 4 (NDUS4)NADH dehydrogenase ubiquinone Fe-S protein 4- Family
N [auth A6]PF13233Complex1_LYR-like (Complex1_LYR_2)Complex1_LYR-like- Family
O [auth A7]PF07347NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a) (CI-B14_5a)NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)- Family
Q [auth AA]PF00550Phosphopantetheine attachment site (PP-binding)Phosphopantetheine attachment siteA 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.
Domain
B [auth V2]PF01257Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx)Thioredoxin-like [2Fe-2S] ferredoxin- Family
E [auth S3]PF00329Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa)Respiratory-chain NADH dehydrogenase, 30 Kd subunit- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth S7]NADH:ubiquinone oxidoreductase core subunit S7---
A [auth V1]NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
J [auth S4]NADH:ubiquinone oxidoreductase subunit S4-
K [auth A9]NADH:ubiquinone oxidoreductase subunit A9---
L [auth A2]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2---
M [auth A5]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5---
N [auth A6]NADH:ubiquinone oxidoreductase subunit A6-
O [auth A7]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7-
P [auth AL]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12---
Q [auth AA]Acyl carrier protein -
R [auth AM]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13---
B [auth V2]NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
C [auth S1]NADH:ubiquinone oxidoreductase core subunit S1---
D [auth S2]NADH:ubiquinone oxidoreductase core subunit S2,NADH:ubiquinone oxidoreductase core subunit S2---
E [auth S3]NADH:ubiquinone oxidoreductase core subunit S3 -
G [auth S8]NADH:ubiquinone oxidoreductase core subunit S8---
H [auth V3]NADH:ubiquinone oxidoreductase subunit V3---
I [auth S6]NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth V1]IPR019575NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainDomain
A [auth V1]IPR019554Soluble ligand binding domainDomain
A [auth V1]IPR011537NADH ubiquinone oxidoreductase, F subunitFamily
A [auth V1]IPR001949NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved siteConserved Site
A [auth V1]IPR037225NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamilyHomologous Superfamily
A [auth V1]IPR037207NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamilyHomologous Superfamily
A [auth V1]IPR011538NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domainDomain
J [auth S4]IPR038532NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamilyHomologous Superfamily
J [auth S4]IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4 mitochondrial-likeFamily
N [auth A6]IPR016488NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6Family
N [auth A6]IPR045299NDUFA6, LYR domainDomain
O [auth A7]IPR009947NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7Family
Q [auth AA]IPR006162Phosphopantetheine attachment sitePTM
Q [auth AA]IPR009081Phosphopantetheine binding ACP domainDomain
Q [auth AA]IPR036736ACP-like superfamilyHomologous Superfamily
Q [auth AA]IPR003231Acyl carrier proteinFamily
B [auth V2]IPR042128NuoE domainDomain
B [auth V2]IPR002023NADH-quinone oxidoreductase subunit E-likeFamily
B [auth V2]IPR041921NADH-quinone oxidoreductase subunit E, N-terminalHomologous Superfamily
B [auth V2]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
E [auth S3]IPR037232NADH:ubiquinone oxidoreductase, 30kDa subunit superfamilyHomologous Superfamily
E [auth S3]IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitDomain
E [auth S3]IPR020396NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved siteConserved Site
E [auth S3]IPR010218NADH dehydrogenase, subunit CFamily