6Q97

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
O [auth I]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like8032963 3000950 SCOP2B (2022-06-29)
O [auth I]SCOP2B SuperfamilyRibosomal protein L11 C-terminal domain8032961 3001186 SCOP2B (2022-06-29)
BB [auth v]SCOP2B SuperfamilyNucleic acid-binding proteins8059276 3000135 SCOP2B (2022-06-29)
J [auth D]SCOP2B SuperfamilyRibosomal protein L48096356 3001146 SCOP2B (2022-06-29)
K [auth E]SCOP2B SuperfamilyRL5-like8096352 3001709 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyRibosomal protein L68035397 3000724 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyRibosomal protein L68035398 3000724 SCOP2B (2022-06-29)
M [auth G]SCOP2B SuperfamilyRibosomal protein L9 C-domain8032958 3000329 SCOP2B (2022-06-29)
M [auth G]SCOP2B SuperfamilyL9 N-domain-like8032960 3000338 SCOP2B (2022-06-29)
N [auth H]SCOP2B SuperfamilyRibosomal protein L10-like8079773 3000665 SCOP2B (2022-06-29)
P [auth J]SCOP2 FamilyRibosomal protein L138096727 4003623 SCOP2 (2022-06-29)
P [auth J]SCOP2 SuperfamilyRibosomal protein L138096728 3001134 SCOP2 (2022-06-29)
Q [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like8103358 3000433 SCOP2B (2022-06-29)
R [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070553 3001045 SCOP2B (2022-06-29)
S [auth M]SCOP2B SuperfamilyRibosomal protein L16p/L10e8096366 3000884 SCOP2B (2022-06-29)
T [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L178035409 3000995 SCOP2B (2022-06-29)
U [auth O]SCOP2B SuperfamilyTranslational machinery components8032969 3000571 SCOP2B (2022-06-29)
V [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096364 3000334 SCOP2B (2022-06-29)
W [auth Q]SCOP2B SuperfamilyRibosomal protein L208096382 3000563 SCOP2B (2022-06-29)
X [auth R]SCOP2B Superfamilyl21p-like8096354 3002005 SCOP2B (2022-06-29)
Y [auth S]SCOP2 FamilyRibosomal protein L228097613 4001212 SCOP2 (2022-06-29)
Y [auth S]SCOP2 SuperfamilyRibosomal protein L228097614 3001078 SCOP2 (2022-06-29)
Z [auth T]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8035415 3000210 SCOP2B (2022-06-29)
AA [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096358 3000334 SCOP2B (2022-06-29)
BA [auth V]SCOP2B SuperfamilyRibosomal protein L25-like8042538 3001161 SCOP2B (2022-06-29)
CA [auth W]SCOP2B SuperfamilyRibosomal L27 protein-like8096338 3000539 SCOP2B (2022-06-29)
DA [auth X]SCOP2B SuperfamilyL28p-like8035424 3001966 SCOP2B (2022-06-29)
EA [auth Y]SCOP2 FamilyRibosomal protein L29 (L29p)8093545 4000600 SCOP2 (2022-06-29)
EA [auth Y]SCOP2 SuperfamilyRibosomal protein L29 (L29p)8093546 3000713 SCOP2 (2022-06-29)
FA [auth Z]SCOP2 FamilyRibosomal protein L30p/L7e8093431 4001360 SCOP2 (2022-06-29)
FA [auth Z]SCOP2 SuperfamilyRibosomal protein L30p/L7e8093432 3001378 SCOP2 (2022-06-29)
GA [auth a]SCOP2B SuperfamilyL28p-like8032740 3001966 SCOP2B (2022-06-29)
HA [auth b]SCOP2 FamilyRibosomal protein L32p8093517 4000508 SCOP2 (2022-06-29)
HA [auth b]SCOP2 SuperfamilyZn-binding ribosomal proteins8093518 3001320 SCOP2 (2022-06-29)
IA [auth c]SCOP2B SuperfamilyZn-binding ribosomal proteins8096362 3001320 SCOP2B (2022-06-29)
KA [auth e]SCOP2B SuperfamilyL35p-like8035388 3000790 SCOP2B (2022-06-29)
MA [auth g]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063838 3001397 SCOP2B (2022-06-29)
D [auth 5]SCOP2 FamilySmall protein B (SmpB)8098369 4002211 SCOP2 (2022-06-29)
D [auth 5]SCOP2 SuperfamilySmall protein B (SmpB)8098370 3000956 SCOP2 (2022-06-29)
OA [auth i]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083400 3001473 SCOP2B (2022-06-29)
QA [auth k]SCOP2B SuperfamilyRibosomal protein S68066495 3001323 SCOP2B (2022-06-29)
RA [auth l]SCOP2B SuperfamilyRibosomal protein S78077979 3000799 SCOP2B (2022-06-29)
SA [auth m]SCOP2B SuperfamilyRibosomal protein S88079059 3000709 SCOP2B (2022-06-29)
TA [auth n]SCOP2 FamilyTranslational machinery components8095204 4000951 SCOP2 (2022-06-29)
TA [auth n]SCOP2 SuperfamilyRibosomal protein S5 domain 2-like8095205 3000100 SCOP2 (2022-06-29)
UA [auth o]SCOP2B SuperfamilyRibosomal protein S108102681 3001336 SCOP2B (2022-06-29)
VA [auth p]SCOP2B SuperfamilyTranslational machinery components8035368 3000571 SCOP2B (2022-06-29)
XA [auth r]SCOP2 FamilyRibosomal protein S138094117 4000260 SCOP2 (2022-06-29)
XA [auth r]SCOP2 SuperfamilyS13-like H2TH domain8094118 3000053 SCOP2 (2022-06-29)
YA [auth s]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052568 3000068 SCOP2B (2022-06-29)
ZA [auth t]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8032375 3001284 SCOP2B (2022-06-29)
AB [auth u]SCOP2 FamilyRibosomal protein S168100795 4001077 SCOP2 (2022-06-29)
AB [auth u]SCOP2 SuperfamilyRibosomal protein S168100796 3000680 SCOP2 (2022-06-29)
FB [auth z]SCOP2B SuperfamilyRibosomal protein S218053090 3002159 SCOP2B (2022-06-29)
I [auth C]SCOP2B SuperfamilyTranslational proteins8032955 3000811 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth I]Ribosomal_L11e6q97I2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
O [auth I]Ribosomal_L11_Ne6q97I1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
NA [auth h]Ribosomal_S3_Ce6q97h1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
NA [auth h]KH_2_1e6q97h2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
BB [auth v]Ribosomal_S17_1e6q97v1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
J [auth D]Ribosomal_L4e6q97D1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
K [auth E]Ribosomal_L5_Ce6q97E1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
L [auth F]Ribosomal_L6e6q97F1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
L [auth F]Ribosomal_L6_1e6q97F2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
M [auth G]Ribosomal_L9_Ne6q97G1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
M [auth G]Ribosomal_L9_C_1e6q97G2 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_C_1ECOD (1.6)
N [auth H]Ribosomal_L10e6q97H1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
P [auth J]Ribosomal_L13e6q97J1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
Q [auth K]Ribosomal_L14e6q97K1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
R [auth L]Ribosomal_L27Ae6q97L1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
S [auth M]Ribosomal_L16e6q97M1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
T [auth N]Ribosomal_L17_1e6q97N1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
U [auth O]Ribosomal_L18pe6q97O1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
V [auth P]Ribosomal_L19e6q97P1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
W [auth Q]Ribosomal_L20e6q97Q1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
X [auth R]Ribosomal_L21pe6q97R1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
Y [auth S]Ribosomal_L22e6q97S1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
Z [auth T]Ribosomal_L23_2e6q97T1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
AA [auth U]ribosomal_L24_1e6q97U1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
BA [auth V]Ribosomal_L25pe6q97V1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
CA [auth W]Ribosomal_L27e6q97W1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
DA [auth X]Ribosomal_L28e6q97X1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
EA [auth Y]Ribosomal_L29e6q97Y1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
FA [auth Z]Ribosomal_L30e6q97Z1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
GA [auth a]Ribosomal_L31e6q97a1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
HA [auth b]Ribosomal_L32pe6q97b1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
IA [auth c]Ribosomal_L33e6q97c1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
JA [auth d]Ribosomal_L34e6q97d1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
KA [auth e]Ribosomal_L35pe6q97e1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
LA [auth f]Ribosomal_L36e6q97f1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
MA [auth g]Ribosomal_S2e6q97g1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
D [auth 5]SmpBe6q9751 A: beta barrelsX: OB-foldH: Small protein B (SmpB) (From Topology)T: Small protein B (SmpB)F: SmpBECOD (1.6)
OA [auth i]S4e6q97i1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
PA [auth j]Ribosomal_S5_Ce6q97j2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
PA [auth j]Ribosomal_S5e6q97j1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
QA [auth k]Ribosomal_S6e6q97k1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
RA [auth l]Ribosomal_S7_1e6q97l1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
SA [auth m]Ribosomal_S8_Ne6q97m2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
SA [auth m]Ribosomal_S8_Ce6q97m1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
TA [auth n]Ribosomal_S9e6q97n1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
UA [auth o]Ribosomal_S10e6q97o1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
VA [auth p]Ribosomal_S11e6q97p1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
WA [auth q]Ribosom_S12_S23e6q97q1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
XA [auth r]Ribosomal_S13_1e6q97r1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
YA [auth s]Ribosomal_S14_1e6q97s1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
ZA [auth t]Ribosomal_S15_1e6q97t1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
AB [auth u]Ribosomal_S16e6q97u1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
CB [auth w]Ribosomal_S18e6q97w1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
DB [auth x]Ribosomal_S19e6q97x1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
EB [auth y]Ribosomal_S20pe6q97y1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
FB [auth z]Ribosomal_S21e6q97z1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21ECOD (1.6)
H [auth B]Ribosomal_L2_1e6q97B1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
H [auth B]Ribosomal_L2_Ce6q97B2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
I [auth C]Ribosomal_L3e6q97C1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
O [auth I]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
O [auth I]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
NA [auth h]PF07650KH domain (KH_2)KH domain- Domain
NA [auth h]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
BB [auth v]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
J [auth D]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
K [auth E]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
K [auth E]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
L [auth F]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
M [auth G]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
M [auth G]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
N [auth H]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
P [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
Q [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
R [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
S [auth M]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
T [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
U [auth O]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
V [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
W [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
X [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
Z [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
AA [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
AA [auth U]PF00467KOW motif (KOW)KOW motif- Family
BA [auth V]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
CA [auth W]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
DA [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
EA [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
FA [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
GA [auth a]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
IA [auth c]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
JA [auth d]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
KA [auth e]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
MA [auth g]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
D [auth 5]PF01668SmpB protein (SmpB)SmpB protein- Family
OA [auth i]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
OA [auth i]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PA [auth j]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
PA [auth j]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
QA [auth k]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
RA [auth l]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
SA [auth m]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
UA [auth o]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
VA [auth p]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
YA [auth s]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
ZA [auth t]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
CB [auth w]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
DB [auth x]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
EB [auth y]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
FB [auth z]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
H [auth B]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
H [auth B]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
I [auth C]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
O [auth I]50S ribosomal protein L11
NA [auth h]30S ribosomal protein S3
BB [auth v]30S ribosomal protein S17
A [auth 1]23S ribosomal RNA---
J [auth D]50S ribosomal protein L4
K [auth E]50S ribosomal protein L5
L [auth F]50S ribosomal protein L6
M [auth G]50S ribosomal protein L9
N [auth H]50S ribosomal protein L10
P [auth J]50S ribosomal protein L13
Q [auth K]50S ribosomal protein L14
R [auth L]50S ribosomal protein L15
S [auth M]50S ribosomal protein L16
B [auth 2]16S ribosomal RNA---
T [auth N]50S ribosomal protein L17
U [auth O]50S ribosomal protein L18
V [auth P]50S ribosomal protein L19
W [auth Q]50S ribosomal protein L20
X [auth R]50S ribosomal protein L21
Y [auth S]50S ribosomal protein L22---
Z [auth T]50S ribosomal protein L23
AA [auth U]50S ribosomal protein L24
BA [auth V]50S ribosomal protein L25
CA [auth W]50S ribosomal protein L27
C [auth 3]5S ribosomal RNA---
DA [auth X]50S ribosomal protein L28
EA [auth Y]50S ribosomal protein L29---
FA [auth Z]50S ribosomal protein L30
GA [auth a]50S ribosomal protein L31
HA [auth b]50S ribosomal protein L32---
IA [auth c]50S ribosomal protein L33
JA [auth d]50S ribosomal protein L34
KA [auth e]50S ribosomal protein L35
LA [auth f]50S ribosomal protein L36---
MA [auth g]30S ribosomal protein S2
D [auth 5]SsrA-binding protein
OA [auth i]30S ribosomal protein S4
PA [auth j]30S ribosomal protein S5
QA [auth k]30S ribosomal protein S6
RA [auth l]30S ribosomal protein S7
SA [auth m]30S ribosomal protein S8
TA [auth n]30S ribosomal protein S9---
UA [auth o]30S ribosomal protein S10
VA [auth p]30S ribosomal protein S11
WA [auth q]30S ribosomal protein S12---
E [auth 6]Nascent peptide---
XA [auth r]30S ribosomal protein S13---
YA [auth s]30S ribosomal protein S14
ZA [auth t]30S ribosomal protein S15
AB [auth u]30S ribosomal protein S16---
CB [auth w]30S ribosomal protein S18
DB [auth x]30S ribosomal protein S19---
EB [auth y]30S ribosomal protein S20
FB [auth z]30S ribosomal protein S21
GB [auth 4]transfer-messenger RNA (tmRNA)---
F [auth 8]tRNA-Met---
HB [auth 7]tRNA-Val---
G [auth 9]mRNA---
H [auth B]50S ribosomal protein L2---
I [auth C]50S ribosomal protein L3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
O [auth I]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
O [auth I]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
O [auth I]IPR000911Ribosomal protein uL11Family
O [auth I]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
O [auth I]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
O [auth I]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
O [auth I]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
NA [auth h]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
NA [auth h]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
NA [auth h]IPR004087K Homology domainDomain
NA [auth h]IPR004044K Homology domain, type 2Domain
NA [auth h]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
NA [auth h]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
NA [auth h]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
NA [auth h]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
BB [auth v]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
BB [auth v]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
BB [auth v]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BB [auth v]IPR000266Small ribosomal subunit protein uS17Family
J [auth D]IPR013005Large ribosomal subunit protein uL4-likeFamily
J [auth D]IPR002136Large ribosomal subunit protein uL4Family
J [auth D]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
K [auth E]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
K [auth E]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
K [auth E]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
K [auth E]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
K [auth E]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
K [auth E]IPR002132Large ribosomal subunit protein uL5Family
L [auth F]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
L [auth F]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
L [auth F]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
L [auth F]IPR000702Large ribosomal subunit protein uL6-likeFamily
L [auth F]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
M [auth G]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
M [auth G]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
M [auth G]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
M [auth G]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
M [auth G]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
M [auth G]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
M [auth G]IPR000244Large ribosomal subunit protein bL9Family
N [auth H]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
N [auth H]IPR001790Large ribosomal subunit protein uL10Family
N [auth H]IPR022973Large ribosomal subunit protein uL10, bacterialFamily
N [auth H]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
N [auth H]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
P [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
P [auth J]IPR005822Large ribosomal subunit protein uL13Family
P [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
P [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
Q [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
Q [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Q [auth K]IPR000218Large ribosomal subunit protein uL14Family
Q [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
R [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
R [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
R [auth L]IPR030878Large ribosomal subunit protein uL15Family
R [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
R [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
S [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
S [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
S [auth M]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
S [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
S [auth M]IPR047873Large ribosomal subunit protein uL16Family
T [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
T [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
T [auth N]IPR000456Large ribosomal subunit protein bL17Family
U [auth O]IPR005484Large ribosomal subunit protein uL18Family
U [auth O]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
V [auth P]IPR001857Large ribosomal subunit protein bL19Family
V [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
V [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
V [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
W [auth Q]IPR005813Large ribosomal subunit protein bL20Family
X [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
X [auth R]IPR001787Large ribosomal subunit protein bL21Family
X [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
X [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
Z [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Z [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
Z [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
AA [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth U]IPR003256Large ribosomal subunit protein uL24Family
AA [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
AA [auth U]IPR005824KOWDomain
AA [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BA [auth V]IPR020055Ribosomal protein bL25, short-formFamily
BA [auth V]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
BA [auth V]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
BA [auth V]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
CA [auth W]IPR001684Large ribosomal subunit protein bL27Family
CA [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
DA [auth X]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
DA [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
DA [auth X]IPR026569Large ribosomal subunit protein bL28Family
DA [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
FA [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
FA [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
FA [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
FA [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
GA [auth a]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
GA [auth a]IPR027491Large ribosomal subunit protein bL31 type AFamily
GA [auth a]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
GA [auth a]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
IA [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IA [auth c]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
IA [auth c]IPR001705Large ribosomal subunit protein bL33Family
IA [auth c]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
JA [auth d]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
JA [auth d]IPR000271Large ribosomal subunit protein bL34Family
KA [auth e]IPR021137Large ribosomal subunit protein bL35-likeFamily
KA [auth e]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
KA [auth e]IPR001706Large ribosomal subunit protein bL35Family
KA [auth e]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
MA [auth g]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
MA [auth g]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
MA [auth g]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
MA [auth g]IPR001865Small ribosomal subunit protein uS2Family
D [auth 5]IPR020081SsrA-binding protein, conserved siteConserved Site
D [auth 5]IPR023620Small protein BHomologous Superfamily
D [auth 5]IPR000037SsrA-binding proteinFamily
OA [auth i]IPR002942RNA-binding S4 domainDomain
OA [auth i]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
OA [auth i]IPR022801Small ribosomal subunit protein uS4Family
OA [auth i]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
OA [auth i]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
OA [auth i]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
PA [auth j]IPR000851Small ribosomal subunit protein uS5Family
PA [auth j]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
PA [auth j]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
PA [auth j]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
PA [auth j]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
PA [auth j]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
PA [auth j]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
QA [auth k]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
QA [auth k]IPR000529Small ribosomal subunit protein bS6Family
QA [auth k]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
QA [auth k]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
QA [auth k]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
RA [auth l]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
RA [auth l]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
RA [auth l]IPR000235Small ribosomal subunit protein uS7Family
RA [auth l]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
RA [auth l]IPR023798Small ribosomal subunit protein uS7 domainDomain
SA [auth m]IPR000630Small ribosomal subunit protein uS8Family
SA [auth m]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
SA [auth m]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
UA [auth o]IPR027486Small ribosomal subunit protein uS10 domainDomain
UA [auth o]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
UA [auth o]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
UA [auth o]IPR001848Small ribosomal subunit protein uS10Family
VA [auth p]IPR001971Small ribosomal subunit protein uS11Family
VA [auth p]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
VA [auth p]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
VA [auth p]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
YA [auth s]IPR001209Small ribosomal subunit protein uS14Family
YA [auth s]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
YA [auth s]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
ZA [auth t]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
ZA [auth t]IPR000589Small ribosomal subunit protein uS15Family
ZA [auth t]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
CB [auth w]IPR001648Small ribosomal subunit protein bS18Family
CB [auth w]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
CB [auth w]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
EB [auth y]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
EB [auth y]IPR002583Small ribosomal subunit protein bS20Family
FB [auth z]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
FB [auth z]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
FB [auth z]IPR001911Small ribosomal subunit protein bS21Family
I [auth C]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
I [auth C]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
I [auth C]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
I [auth C]IPR000597Large ribosomal subunit protein uL3Family