Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth C] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2022-06-29) |
| FB [auth z] | SCOP2B Superfamily | Ribosomal protein S21 | 8053090 | 3002159 | SCOP2B (2022-06-29) |
| BB [auth v] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2B (2022-06-29) |
| AB [auth u] | SCOP2 Family | Ribosomal protein S16 | 8100795 | 4001077 | SCOP2 (2022-06-29) |
| AB [auth u] | SCOP2 Superfamily | Ribosomal protein S16 | 8100796 | 3000680 | SCOP2 (2022-06-29) |
| ZA [auth t] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8032375 | 3001284 | SCOP2B (2022-06-29) |
| YA [auth s] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052568 | 3000068 | SCOP2B (2022-06-29) |
| XA [auth r] | SCOP2 Family | Ribosomal protein S13 | 8094117 | 4000260 | SCOP2 (2022-06-29) |
| XA [auth r] | SCOP2 Superfamily | S13-like H2TH domain | 8094118 | 3000053 | SCOP2 (2022-06-29) |
| VA [auth p] | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2022-06-29) |
| UA [auth o] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2022-06-29) |
| TA [auth n] | SCOP2 Family | Translational machinery components | 8095204 | 4000951 | SCOP2 (2022-06-29) |
| TA [auth n] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8095205 | 3000100 | SCOP2 (2022-06-29) |
| SA [auth m] | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2022-06-29) |
| RA [auth l] | SCOP2B Superfamily | Ribosomal protein S7 | 8077979 | 3000799 | SCOP2B (2022-06-29) |
| QA [auth k] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
| OA [auth i] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2022-06-29) |
| D [auth 5] | SCOP2 Family | Small protein B (SmpB) | 8098369 | 4002211 | SCOP2 (2022-06-29) |
| D [auth 5] | SCOP2 Superfamily | Small protein B (SmpB) | 8098370 | 3000956 | SCOP2 (2022-06-29) |
| MA [auth g] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2B (2022-06-29) |
| KA [auth e] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2022-06-29) |
| IA [auth c] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
| HA [auth b] | SCOP2 Family | Ribosomal protein L32p | 8093517 | 4000508 | SCOP2 (2022-06-29) |
| HA [auth b] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8093518 | 3001320 | SCOP2 (2022-06-29) |
| GA [auth a] | SCOP2B Superfamily | L28p-like | 8032740 | 3001966 | SCOP2B (2022-06-29) |
| FA [auth Z] | SCOP2 Family | Ribosomal protein L30p/L7e | 8093431 | 4001360 | SCOP2 (2022-06-29) |
| FA [auth Z] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8093432 | 3001378 | SCOP2 (2022-06-29) |
| EA [auth Y] | SCOP2 Family | Ribosomal protein L29 (L29p) | 8093545 | 4000600 | SCOP2 (2022-06-29) |
| EA [auth Y] | SCOP2 Superfamily | Ribosomal protein L29 (L29p) | 8093546 | 3000713 | SCOP2 (2022-06-29) |
| DA [auth X] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2022-06-29) |
| CA [auth W] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
| BA [auth V] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
| AA [auth U] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
| Z [auth T] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| Y [auth S] | SCOP2 Family | Ribosomal protein L22 | 8097613 | 4001212 | SCOP2 (2022-06-29) |
| Y [auth S] | SCOP2 Superfamily | Ribosomal protein L22 | 8097614 | 3001078 | SCOP2 (2022-06-29) |
| X [auth R] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2022-06-29) |
| W [auth Q] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
| V [auth P] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
| U [auth O] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2022-06-29) |
| T [auth N] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| S [auth M] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2022-06-29) |
| R [auth L] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2022-06-29) |
| Q [auth K] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| P [auth J] | SCOP2 Family | Ribosomal protein L13 | 8096727 | 4003623 | SCOP2 (2022-06-29) |
| P [auth J] | SCOP2 Superfamily | Ribosomal protein L13 | 8096728 | 3001134 | SCOP2 (2022-06-29) |
| O [auth I] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2B (2022-06-29) |
| O [auth I] | SCOP2B Superfamily | Ribosomal protein L11, C-terminal domain | 8032961 | 3001186 | SCOP2B (2022-06-29) |
| N [auth H] | SCOP2B Superfamily | Ribosomal protein L10-like | 8079773 | 3000665 | SCOP2B (2022-06-29) |
| M [auth G] | SCOP2B Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2B (2022-06-29) |
| M [auth G] | SCOP2B Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2B (2022-06-29) |
| L [auth F] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
| L [auth F] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
| K [auth E] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2022-06-29) |
| J [auth D] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth C] | AAA_11 | e6q97C1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| H [auth B] | AAA_11 | e6q97B1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| FB [auth z] | AAA_11 | e6q97z1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| EB [auth y] | AAA_11 | e6q97y1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| DB [auth x] | AAA_11 | e6q97x1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| CB [auth w] | AAA_11 | e6q97w1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| BB [auth v] | AAA_11 | e6q97v1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| AB [auth u] | AAA_11 | e6q97u1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| ZA [auth t] | AAA_11 | e6q97t1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| YA [auth s] | AAA_11 | e6q97s1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| XA [auth r] | AAA_11 | e6q97r1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| WA [auth q] | AAA_11 | e6q97q1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| VA [auth p] | AAA_11 | e6q97p1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| UA [auth o] | AAA_11 | e6q97o1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| TA [auth n] | AAA_11 | e6q97n1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| SA [auth m] | AAA_11 | e6q97m1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| RA [auth l] | AAA_11 | e6q97l1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| QA [auth k] | AAA_11 | e6q97k1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| PA [auth j] | AAA_11 | e6q97j1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| OA [auth i] | AAA_11 | e6q97i1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| NA [auth h] | AAA_11 | e6q97h1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| D [auth 5] | 7tm_1 | e6q9751 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: 7tm_1 | ECOD (v294.1) |
| MA [auth g] | AAA_11 | e6q97g1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| LA [auth f] | AAA_11 | e6q97f1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| KA [auth e] | AAA_11 | e6q97e1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| JA [auth d] | AAA_11 | e6q97d1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| IA [auth c] | AAA_11 | e6q97c1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| HA [auth b] | AAA_11 | e6q97b1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| GA [auth a] | AAA_11 | e6q97a1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| FA [auth Z] | AAA_11 | e6q97Z1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| EA [auth Y] | AAA_11 | e6q97Y1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| DA [auth X] | AAA_11 | e6q97X1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| CA [auth W] | AAA_11 | e6q97W1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| BA [auth V] | AAA_11 | e6q97V1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| AA [auth U] | AAA_11 | e6q97U1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| Z [auth T] | AAA_11 | e6q97T1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| Y [auth S] | AAA_11 | e6q97S1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| X [auth R] | AAA_11 | e6q97R1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| W [auth Q] | AAA_11 | e6q97Q1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| V [auth P] | AAA_11 | e6q97P1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| U [auth O] | AAA_11 | e6q97O1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| T [auth N] | AAA_11 | e6q97N1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| S [auth M] | AAA_11 | e6q97M1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| R [auth L] | AAA_11 | e6q97L1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| Q [auth K] | AAA_11 | e6q97K1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| P [auth J] | AAA_11 | e6q97J1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| O [auth I] | AAA_11 | e6q97I1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| N [auth H] | AAA_11 | e6q97H1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| M [auth G] | AAA_11 | e6q97G1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| L [auth F] | AAA_11 | e6q97F1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| K [auth E] | AAA_11 | e6q97E1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: AAA_11 | ECOD (v294.1) |
| J [auth D] | Ald_deCOase | e6q97D1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ald_deCOase | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth C] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| I [auth C] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| D [auth 5] | PF01668 | SmpB protein (SmpB) | SmpB protein | - | Family |
| DA [auth X] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| CA [auth W] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| CA [auth W] | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |
| BA [auth V] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| BA [auth V] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| AA [auth U] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| AA [auth U] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| Z [auth T] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| Z [auth T] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| Y [auth S] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| X [auth R] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| W [auth Q] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| V [auth P] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| V [auth P] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| U [auth O] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| U [auth O] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| T [auth N] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| S [auth M] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| S [auth M] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| R [auth L] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| R [auth L] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| Q [auth K] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| Q [auth K] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| P [auth J] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| P [auth J] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| O [auth I] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| O [auth I] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| O [auth I] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| N [auth H] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| N [auth H] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| N [auth H] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
| M [auth G] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| M [auth G] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
| M [auth G] | PF03948 | Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) | Ribosomal protein L9, C-terminal domain | Domain | |
| L [auth F] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| K [auth E] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| K [auth E] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| K [auth E] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| J [auth D] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| J [auth D] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |














