6POL | pdb_00006pol

Crystal structure of the human NELL1 EGF1-3-Robo3 FN1 complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	KWL1	e6polF1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: KWL1	ECOD (v294.1)
D	KWL1	e6polD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: KWL1	ECOD (v294.1)
B	KWL1	e6polB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: KWL1	ECOD (v294.1)
E	KWL1	e6polE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: KWL1	ECOD (v294.1)
C	KWL1	e6polC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: KWL1	ECOD (v294.1)
A	KWL1	e6polA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: KWL1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F	PF07645	Calcium-binding EGF domain (EGF_CA)	Calcium-binding EGF domain		Domain
B, D, F	PF12947	EGF domain (EGF_3)	EGF domain	This family includes a variety of EGF-like domain homologues. This family includes the C-terminal domain of the malaria parasite MSP1 protein [1].	Domain
A, C, E	PF00041	Fibronectin type III domain (fn3)	Fibronectin type III domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F	Protein kinase C-binding protein NELL1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding kinase binding protein kinase C binding enzyme binding protein kinase binding heparin binding glycosaminoglycan binding carbohydrate derivative binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding kinase binding protein kinase C binding enzyme binding protein kinase binding heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding	regulation of osteoblast differentiation developmental process multicellular organismal process regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process biological regulation regulation of cell differentiation osteoblast differentiation ossification cell differentiation cellular process regulation of biosynthetic process regulation of osteoblast differentiation developmental process multicellular organismal process regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process biological regulation regulation of cell differentiation osteoblast differentiation ossification cell differentiation cellular process regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of biological process regulation of biomineral tissue development regulation of bone mineralization positive regulation of ossification positive regulation of developmental process multicellular organism development positive regulation of biomineral tissue development anatomical structure development biomineral tissue development regulation of multicellular organismal process regulation of multicellular organismal development bone mineralization animal organ development tissue development positive regulation of bone mineralization positive regulation of multicellular organismal process regulation of ossification negative regulation of cell population proliferation cell population proliferation negative regulation of biological process osteoblast proliferation regulation of cell population proliferation negative regulation of cellular process negative regulation of osteoblast proliferation regulation of osteoblast proliferation nervous system development system development positive regulation of osteoblast differentiation positive regulation of cell differentiation positive regulation of cellular process catabolic process macromolecule catabolic process negative regulation of protein catabolic process regulation of primary metabolic process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of catabolic process regulation of protein metabolic process negative regulation of metabolic process primary metabolic process protein catabolic process regulation of catabolic process regulation of protein catabolic process	membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system cytoplasm perinuclear region of cytoplasm extracellular region extracellular space
A, C, E	Roundabout homolog 3	cell adhesion molecule binding protein binding binding cell adhesion mediator activity cell-cell adhesion mediator activity	neuron recognition multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development axon choice point recognition cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron recognition multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development axon choice point recognition cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development cell recognition cellular component organization or biogenesis system development developmental process plasma membrane bounded cell projection organization axon midline choice point recognition axon guidance nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron projection guidance neuron development cellular process head development central nervous system development animal organ development brain development regulation of cellular process response to stimulus taxis regulation of axon guidance positive regulation of cell projection organization chemotaxis regulation of biological process regulation of cell projection organization response to external stimulus regulation of response to stimulus response to chemical regulation of locomotion regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization regulation of response to external stimulus positive regulation of biological process positive regulation of neuron projection development positive regulation of axon guidance locomotion positive regulation of cellular process biological regulation regulation of chemotaxis regulation of plasma membrane bounded cell projection organization tube development negative regulation of locomotion negative chemotaxis negative regulation of response to stimulus negative regulation of biological process negative regulation of negative chemotaxis negative regulation of chemotaxis regulation of negative chemotaxis negative regulation of response to external stimulus positive regulation of nervous system development regulation of cell differentiation regulation of neurogenesis regulation of cell development positive regulation of developmental process positive regulation of cell development positive regulation of multicellular organismal process regulation of developmental process regulation of nervous system development positive regulation of cell differentiation regulation of axonogenesis positive regulation of neurogenesis regulation of multicellular organismal process positive regulation of axonogenesis regulation of anatomical structure morphogenesis regulation of multicellular organismal development commissural neuron axon guidance dendrite self-avoidance cell adhesion cell-cell adhesion homophilic cell-cell adhesion neuron migration cell migration cell motility	cellular anatomical structure membrane cell periphery plasma membrane axon cell projection neuron projection plasma membrane bounded cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F	IPR024731	NELL2-like, EGF domain	Domain
B, D, F	IPR049883	NOTCH1, EGF-like calcium-binding domain	Domain
B, D, F	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
B, D, F	IPR001007	VWFC domain	Domain
B, D, F	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
B, D, F	IPR000742	EGF-like domain	Domain
B, D, F	IPR001791	Laminin G domain	Domain
B, D, F	IPR051586	Protein kinase C-binding NELL	Family
B, D, F	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
B, D, F	IPR001881	EGF-like calcium-binding domain	Domain
B, D, F	IPR048287	Thrombospondin-like, N-terminal domain	Domain
B, D, F	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM
A, C, E	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, C, E	IPR003598	Immunoglobulin subtype 2	Domain
A, C, E	IPR051170	Neural and epithelial cell adhesion domain-containing protein	Family
A, C, E	IPR003599	Immunoglobulin domain subtype	Domain
A, C, E	IPR013098	Immunoglobulin I-set	Domain
A, C, E	IPR003961	Fibronectin type III	Domain
A, C, E	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, C, E	IPR007110	Immunoglobulin-like domain	Domain
A, C, E	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D, F	Pharos: Q92832	esophageal adenocarcinoma craniosynostosis Scaphycephaly lung cancer malignant glioma oligodendroglioma pituitary cancer subependymal giant cell astrocytoma trigonocephaly astrocytic tumor colorectal cancer glioblastoma major depressive disorder medulloblastoma Pick disease esophageal adenocarcinoma craniosynostosis Scaphycephaly lung cancer malignant glioma oligodendroglioma pituitary cancer subependymal giant cell astrocytoma trigonocephaly astrocytic tumor colorectal cancer glioblastoma major depressive disorder medulloblastoma Pick disease psoriasis atypical teratoid rhabdoid tumor large cell medulloblastoma malignant ependymoma pilocytic astrocytoma
A, C, E	Pharos: Q96MS0	gaze palsy, familial horizontal, with progressive scoliosis 1 horizontal gaze palsy with progressive scoliosis autism breast carcinoma Ehlers-Danlos syndrome intellectual disability malignant mesothelioma ovarian cancer Autistic Disorder invasive ductal breast carcinoma medulloblastoma breast cancer ductal breast carcinoma in situ lung cancer