6PJ5

Time-resolved structural snapshot of proteolysis by GlpG inside the membrane

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Rhomboid-like	8038801	3000368	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01694	e6pj5A1	A: alpha bundles	X: Rhomboid-like (From Topology)	H: Rhomboid-like (From Topology)	T: Rhomboid-like	F: PF01694	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1540.10	Mainly Alpha	Up-down Bundle	Rhomboid-like fold	Rhomboid-like	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01694	Rhomboid family (Rhomboid)	Rhomboid family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Rhomboid protease GlpG	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity identical protein binding protein binding binding	organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	cell periphery plasma membrane membrane cellular anatomical entity
B	Peptide aldehyde inhibitor	protein binding binding molecular function activator activity signaling receptor binding molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity epidermal growth factor receptor binding growth factor receptor binding	multicellular organismal process imaginal disc morphogenesis pattern specification process imaginal disc-derived wing morphogenesis metamorphosis multicellular organism development wing disc morphogenesis imaginal disc development instar larval or pupal morphogenesis anatomical structure development post-embryonic animal morphogenesis post-embryonic development animal organ morphogenesis developmental process multicellular organismal process imaginal disc morphogenesis pattern specification process imaginal disc-derived wing morphogenesis metamorphosis multicellular organism development wing disc morphogenesis imaginal disc development instar larval or pupal morphogenesis anatomical structure development post-embryonic animal morphogenesis post-embryonic development animal organ morphogenesis developmental process imaginal disc-derived wing vein specification appendage development post-embryonic appendage morphogenesis animal organ development wing disc development instar larval or pupal development regionalization imaginal disc-derived appendage morphogenesis anatomical structure morphogenesis appendage morphogenesis imaginal disc-derived appendage development cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell surface receptor protein tyrosine kinase signaling pathway cell communication ERBB signaling pathway epidermal growth factor receptor signaling pathway cellular process signal transduction enzyme-linked receptor protein signaling pathway reproductive process cellular component assembly involved in morphogenesis multicellular organismal reproductive process cellular process involved in reproduction in multicellular organism developmental process involved in reproduction egg chorion assembly cellular component organization cellular component biogenesis cellular anatomical entity morphogenesis cellular component assembly anatomical structure formation involved in morphogenesis dorsal appendage formation cellular component organization or biogenesis external encapsulating structure organization positive regulation of locomotion regulation of cell motility sexual reproduction cellular developmental process positive regulation of biological process cell development female gamete generation epithelial cell differentiation gamete generation positive regulation of cell migration follicle cell of egg chamber development positive regulation of epithelial cell migration tissue migration cell differentiation ameboidal-type cell migration positive regulation of cell motility regulation of cell migration cell migration regulation of multicellular organismal process epithelial cell migration cell motility regulation of epithelial cell migration locomotion positive regulation of cellular process epithelium development positive regulation of border follicle cell migration regulation of border follicle cell migration oogenesis follicle cell of egg chamber migration tissue development epithelium migration epithelial cell development border follicle cell migration regulation of locomotion germ cell development morphogenesis of follicular epithelium dorsal/ventral axis specification, ovarian follicular epithelium establishment or maintenance of cell polarity establishment or maintenance of polarity of follicular epithelium dorsal/ventral axis specification morphogenesis of an epithelium dorsal/ventral pattern formation tissue morphogenesis axis specification maternal determination of dorsal/ventral axis, ovarian follicular epithelium, germ-line encoded anterior/posterior axis specification, follicular epithelium microtubule cytoskeleton organization oocyte development cell maturation establishment or maintenance of microtubule cytoskeleton polarity establishment or maintenance of cytoskeleton polarity oocyte construction developmental maturation organelle organization anatomical structure maturation microtubule-based process oocyte differentiation cytoskeleton organization oocyte microtubule cytoskeleton organization anterior/posterior pattern specification blastoderm segmentation anterior/posterior axis specification, embryo segmentation embryo development tripartite regional subdivision embryonic axis specification anterior/posterior axis specification embryonic pattern specification oocyte axis specification oocyte anterior/posterior axis specification maternal determination of anterior/posterior axis, embryo eggshell formation chorion-containing eggshell formation chorion-containing eggshell pattern formation oocyte dorsal/ventral axis specification determination of bilateral symmetry determination of dorsal/ventral asymmetry determination of dorsal identity specification of symmetry	cell periphery plasma membrane membrane cellular anatomical entity extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR022732	Peptidase S54, GlpG peptidase, N-terminal	Domain
A	IPR038236	GlpG peptidase, N-terminal domain superfamily	Homologous Superfamily
A	IPR022764	Peptidase S54, rhomboid domain	Domain
A	IPR023662	Rhomboid protease GlpG	Family
A	IPR035952	Rhomboid-like superfamily	Homologous Superfamily
B	IPR043403	Protein Gurken/Spitz	Family
B	IPR000742	EGF-like domain	Domain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Intramembrane Proteases	GlpG rhomboid intramembrane protease snapshots, I1

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.