6P1H
Cryo-EM Structure of DNA Polymerase Delta Holoenzyme
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF18018 | e6p1hB2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF18018 | ECOD (1.6) |
B | PF04042 | e6p1hB1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF04042 | ECOD (1.6) |
C | F_UNCLASSIFIED | e6p1hC1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00136 | DNA polymerase family B (DNA_pol_B) | DNA polymerase family B | - | Family | |
PF03104 | DNA polymerase family B, exonuclease domain (DNA_pol_B_exo1) | DNA polymerase family B, exonuclease domain | - | Family | |
PF04042 | DNA polymerase alpha/epsilon subunit B (DNA_pol_E_B) | DNA polymerase alpha/epsilon subunit B | - | Family | |
PF18018 | DNA polymerase delta subunit OB-fold domain (DNA_pol_D_N) | DNA polymerase delta subunit OB-fold domain | The eukaryotic DNA polymerase delta (Pol delta) participates in genome replication, homologous recombination, DNA repair and damage tolerance [1]. Human Pol delta consists of four subunits: p125, p50, p66 and p12. The first three subunits correspond ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR006134 | DNA-directed DNA polymerase, family B, multifunctional domain | Domain | |
IPR017964 | DNA-directed DNA polymerase, family B, conserved site | Conserved Site | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR023211 | DNA polymerase, palm domain superfamily | Homologous Superfamily | |
IPR006172 | DNA-directed DNA polymerase, family B | Family | |
IPR025687 | C4-type zinc-finger of DNA polymerase delta | Domain | |
IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily | |
IPR006133 | DNA-directed DNA polymerase, family B, exonuclease domain | Domain | |
IPR042087 | DNA polymerase family B, thumb domain | Homologous Superfamily | |
IPR024826 | DNA polymerase delta/II small subunit family | Family | |
IPR007185 | DNA polymerase alpha/delta/epsilon, subunit B | Domain | |
IPR040663 | DNA polymerase delta subunit, OB-fold domain | Domain | |
IPR041863 | DNA polymerase delta subunit 2, C-terminal domain | Domain |