Crystal structure of Ciona intestinalis (Ci) Endonuclease V (D234N) in complex with a 23mer DNA containing an inosine followed by a ribo-adenosine
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | V-set | e6oziB1 | A: alpha arrays | X: Nat/Ivy | H: Acyl-CoA N-acyltransferases (Nat) | T: Acyl-CoA N-acyltransferases (Nat) | F: V-set | ECOD (v295.2) |
| A | TSP_1 | e6oziA1 | A: alpha arrays | X: Nat/Ivy | H: Ntn | T: Proteasome subunits | F: TSP_1 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.30.2170.10 | Alpha Beta | 2-Layer Sandwich | archaeoglobus fulgidus dsm 4304 fold | archaeoglobus fulgidus dsm 4304 superfamily | CATH (utative) |
| A | 3.30.2170.10 | Alpha Beta | 2-Layer Sandwich | archaeoglobus fulgidus dsm 4304 fold | archaeoglobus fulgidus dsm 4304 superfamily | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF04493 | Endonuclease V (Endonuclease_5) | Endonuclease V | Endonuclease V is specific for single-stranded DNA or for duplex DNA that contains uracil or that is damaged by a variety of agents [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| DNA/RNA (23-MER) | - | - | - | |
| endonuclease V isoform X2 | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR007581 | Endonuclease V | Family |
