6OTF

Symmetric reconstruction of human norovirus GII.2 Snow Mountain Virus Strain VLP in T=3 symmetry

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth B]	d6otfb_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	automated matches	automated matches	(Snow Mountain virus ) [TaxId: 52276 ],	SCOPe (2.08)
B [auth A]	d6otfa_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	automated matches	automated matches	(Snow Mountain virus ) [TaxId: 52276 ],	SCOPe (2.08)
C	d6otfc_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	automated matches	automated matches	(Snow Mountain virus ) [TaxId: 52276 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	Calici_coat_C_N	e6otfB1	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: Calici_coat_C_N	ECOD (1.6)
A [auth B]	Calici_coat_C_C	e6otfB2	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: Calici_coat_C_C	ECOD (1.6)
A [auth B]	Rhv_4	e6otfB3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Rhv_4	ECOD (1.6)
B [auth A]	Calici_coat_C_N	e6otfA2	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: Calici_coat_C_N	ECOD (1.6)
B [auth A]	Calici_coat_C_C	e6otfA1	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: Calici_coat_C_C	ECOD (1.6)
B [auth A]	Rhv_4	e6otfA3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Rhv_4	ECOD (1.6)
C	Calici_coat_C_N	e6otfC1	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: Calici_coat_C_N	ECOD (1.6)
C	Calici_coat_C_C	e6otfC2	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: Calici_coat_C_C	ECOD (1.6)
C	Rhv_4	e6otfC3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Rhv_4	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth B]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
A [auth B]	2.40.510.10	Mainly Beta	Beta Barrel	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	CATH (utative)
A [auth B]	2.40.30.120	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (utative)
B [auth A]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
B [auth A]	2.40.510.10	Mainly Beta	Beta Barrel	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	CATH (utative)
B [auth A]	2.40.30.120	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (utative)
C	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
C	2.40.510.10	Mainly Beta	Beta Barrel	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	CATH (utative)
C	2.40.30.120	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A], C	PF00915	Calicivirus coat protein (Calici_coat)	Calicivirus coat protein	-	Family
A [auth B], B [auth A], C	PF08435	Calicivirus coat protein C-terminal (Calici_coat_C)	Calicivirus coat protein C-terminal	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C	IPR029053	Viral coat protein subunit	Homologous Superfamily
A [auth B], B [auth A], C	IPR004005	Calicivirus coat protein	Domain
A [auth B], B [auth A], C	IPR013643	Calicivirus coat protein C-terminal	Domain
A [auth B], B [auth A], C	IPR033703	Picornavirus/Calicivirus coat protein	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.