6NZU
Structure of the human frataxin-bound iron-sulfur cluster assembly complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PLP-dependent transferases | 8074674 | 3000954 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | PLP-dependent transferases | 8074674 | 3000954 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Frataxin/Nqo15-like | 8035182 | 3001840 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Frataxin/Nqo15-like | 8035182 | 3001840 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00266 | e6nzuA1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF00266 | ECOD (1.6) |
A | PF00266 | e6nzuA2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00266 | ECOD (1.6) |
E | PF00266 | e6nzuE1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF00266 | ECOD (1.6) |
E | PF00266 | e6nzuE2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00266 | ECOD (1.6) |
B | PF05347 | e6nzuB1 | A: alpha bundles | X: LYR protein (From Topology) | H: LYR protein (From Topology) | T: LYR protein | F: PF05347 | ECOD (1.6) |
F | PF05347 | e6nzuF1 | A: alpha bundles | X: LYR protein (From Topology) | H: LYR protein (From Topology) | T: LYR protein | F: PF05347 | ECOD (1.6) |
C | PF00550 | e6nzuC1 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PF00550 | ECOD (1.6) |
G | PF00550 | e6nzuG1 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PF00550 | ECOD (1.6) |
D | PF01592 | e6nzuD1 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: SufE/NifU (From Topology) | T: SufE/NifU | F: PF01592 | ECOD (1.6) |
H | PF01592 | e6nzuH1 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: SufE/NifU (From Topology) | T: SufE/NifU | F: PF01592 | ECOD (1.6) |
I | PF01491 | e6nzuI1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Frataxin-like (From Topology) | T: Frataxin-like | F: PF01491 | ECOD (1.6) |
J | PF01491 | e6nzuJ1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Frataxin-like (From Topology) | T: Frataxin-like | F: PF01491 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (utative) |
E | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (utative) |
D | 3.90.1010.10 | Alpha Beta | Alpha-Beta Complex | Sufe protein. Chain: A | CATH (utative) | |
H | 3.90.1010.10 | Alpha Beta | Alpha-Beta Complex | Sufe protein. Chain: A | CATH (utative) | |
I | 3.30.920.10 | Alpha Beta | 2-Layer Sandwich | Metal Transport, Frataxin | Chain A | CATH (utative) |
J | 3.30.920.10 | Alpha Beta | 2-Layer Sandwich | Metal Transport, Frataxin | Chain A | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00266 | Aminotransferase class-V (Aminotran_5) | Aminotransferase class-V | This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. | Domain | |
PF05347 | Complex 1 protein (LYR family) (Complex1_LYR) | Complex 1 protein (LYR family) | - | Family | |
PF01592 | NifU-like N terminal domain (NifU_N) | NifU-like N terminal domain | - | Family | |
PF01491 | Frataxin-like domain (Frataxin_Cyay) | Frataxin-like domain | This family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is current ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR020578 | Aminotransferase class-V, pyridoxal-phosphate binding site | Binding Site | |
IPR000192 | Aminotransferase class V domain | Domain | |
IPR010240 | Cysteine desulfurase IscS | Family | |
IPR016454 | Cysteine desulfurase | Family | |
IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily | |
IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
IPR008011 | Complex 1 LYR protein domain | Domain | |
IPR045297 | LYRM4, LYR domain | Domain | |
IPR011339 | Iron-sulfur cluster assembly scaffold protein IscU | Family | |
IPR002871 | NIF system FeS cluster assembly, NifU, N-terminal | Domain | |
IPR020895 | Frataxin conserved site | Conserved Site | |
IPR036524 | Frataxin/CyaY superfamily | Homologous Superfamily | |
IPR002908 | Frataxin/CyaY | Family | |
IPR017789 | Frataxin | Family |