6NYF | pdb_00006nyf

Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 1 (OA-1)

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e6nyfA01	A: Rossmann-like	X: Rossmann-related	H: FAD/NAD(P)-binding domain	T: Binary_toxB	F:	ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Vacuolating cytotoxin autotransporter	toxin activity	-	cell surface cellular anatomical structure periplasmic space extracellular region cell periphery cell outer membrane external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR006315	Outer membrane autotransporter barrel domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR003842	Vacuolating cytotoxin, beta-helical domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR036709	Autotransporter beta-domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR005546	Autotransporter beta-domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F	OPM	Monotopic/peripheral	All beta monotopic/peripheral	Pectate lyase-like	Vacuolating cytotoxin

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Adventitious Membrane Proteins: Alpha-helical Pore-forming Toxins.	VacA vacuolating cytotoxin A oligomeric assembly OA-1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.