6NDF | pdb_00006ndf

RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN WITH STRONTIUM


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd6ndfc_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6ndff_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id6ndfi_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld6ndfl_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Od6ndfo_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Rd6ndfr_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd6ndfb_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Ed6ndfe_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Hd6ndfh_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Kd6ndfk_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Nd6ndfn_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Qd6ndfq_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Ad6ndfa_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Dd6ndfd_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Gd6ndfg_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Jd6ndfj_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Md6ndfm_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Pd6ndfp_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyvWA-like 8041194 3000832 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyvWA-like 8041194 3000832 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyvWA-like 8041194 3000832 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyvWA-like 8041194 3000832 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyvWA-like 8041194 3000832 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyvWA-like 8041194 3000832 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyC-type lectin-like 8065482 3001261 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyC-type lectin-like 8065482 3001261 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyC-type lectin-like 8065482 3001261 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyC-type lectin-like 8065482 3001261 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyC-type lectin-like 8065482 3001261 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyC-type lectin-like 8065482 3001261 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyC-type lectin-like 8065524 3001261 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyC-type lectin-like 8065524 3001261 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyC-type lectin-like 8065524 3001261 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyC-type lectin-like 8065524 3001261 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyC-type lectin-like 8065524 3001261 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyC-type lectin-like 8065524 3001261 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CC1-sete6ndfC1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
FC1-sete6ndfF1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
IC1-sete6ndfI1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
LC1-sete6ndfL1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
OC1-sete6ndfO1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
RC1-sete6ndfR1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
BC1-sete6ndfB1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
EC1-sete6ndfE1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
HC1-sete6ndfH1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
KC1-sete6ndfK1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
NC1-sete6ndfN1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
QC1-sete6ndfQ1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
AC1-sete6ndfA1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
DC1-sete6ndfD1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
GC1-sete6ndfG1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
JC1-sete6ndfJ1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
MC1-sete6ndfM1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)
PC1-sete6ndfP1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: C1-setECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
F3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
I3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
L3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
O3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
R3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
B3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
E3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
H3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
K3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
N3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
Q3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
A3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
D3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
G3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
J3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
M3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
P3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C, F, I, L, O
PF00092von Willebrand factor type A domain (VWA)von Willebrand factor type A domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, F, I, L, O
Integrin alpha-2
B, E, H, K, N
Snaclec rhodocetin subunit delta -
A, D, G, J, M
Snaclec rhodocetin subunit gamma -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C, F, I, L, O
IPR013517FG-GAP repeatRepeat
C, F, I, L, O
IPR048286Integrin alpha, third immunoglobulin-like domainDomain
C, F, I, L, O
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
C, F, I, L, O
IPR002035von Willebrand factor, type ADomain
C, F, I, L, O
IPR048285Integrin alpha, second immunoglobulin-like domainDomain
C, F, I, L, O
IPR032695Integrin domain superfamilyHomologous Superfamily
C, F, I, L, O
IPR013519Integrin alpha beta-propellorRepeat
C, F, I, L, O
IPR000413Integrin alpha chainFamily
C, F, I, L, O
IPR028994Integrin alpha, N-terminalHomologous Superfamily
C, F, I, L, O
IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved siteConserved Site
B, E, H, K, N
IPR001304C-type lectin-likeDomain
B, E, H, K, N
IPR018378C-type lectin, conserved siteConserved Site
B, E, H, K, N
IPR016186C-type lectin-like/link domain superfamilyHomologous Superfamily
B, E, H, K, N
IPR050111C-type lectin and snaclec domain-containing proteinFamily
B, E, H, K, N
IPR016187C-type lectin foldHomologous Superfamily
A, D, G, J, M
IPR001304C-type lectin-likeDomain
A, D, G, J, M
IPR016186C-type lectin-like/link domain superfamilyHomologous Superfamily
A, D, G, J, M
IPR050111C-type lectin and snaclec domain-containing proteinFamily
A, D, G, J, M
IPR016187C-type lectin foldHomologous Superfamily