6M52 | pdb_00006m52

Human apo ferritin frozen on TEM grid with amorphous carbon supporting film


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Xd6m52x_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Wd6m52w_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Vd6m52v_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ud6m52u_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Td6m52t_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Sd6m52s_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Rd6m52r_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Qd6m52q_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Pd6m52p_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Od6m52o_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Nd6m52n_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Md6m52m_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld6m52l_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd6m52k_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd6m52j_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id6m52i_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd6m52h_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd6m52g_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6m52f_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed6m52e_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd6m52d_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd6m52c_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd6m52b_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad6m52a_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
XSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
USCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyFerritin-like 8038756 3001658 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
XBTB_2e6m52X1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
WBTB_2e6m52W1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
VBTB_2e6m52V1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
UBTB_2e6m52U1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
TBTB_2e6m52T1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
SBTB_2e6m52S1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
RBTB_2e6m52R1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
QBTB_2e6m52Q1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
PBTB_2e6m52P1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
OBTB_2e6m52O1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
NBTB_2e6m52N1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
MBTB_2e6m52M1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
LBTB_2e6m52L1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
KBTB_2e6m52K1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
JBTB_2e6m52J1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
IBTB_2e6m52I1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
HBTB_2e6m52H1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
GBTB_2e6m52G1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
FBTB_2e6m52F1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
EBTB_2e6m52E1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
DBTB_2e6m52D1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
CBTB_2e6m52C1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
BBTB_2e6m52B1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BTB_2ECOD (v294.1)
AC1-sete6m52A1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
X1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
W1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
V1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
U1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
T1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
S1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
R1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
Q1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
P1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
O1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
N1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
M1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
L1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
K1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
J1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
I1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
H1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
G1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
F1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
E1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
D1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
C1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
B1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
A1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00210Ferritin-like domain (Ferritin)Ferritin-like domainThis family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Ferritin heavy chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR009040Ferritin-like diiron domainDomain
A, B, C, D, E
IPR012347Ferritin-likeHomologous Superfamily
A, B, C, D, E
IPR009078Ferritin-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR008331Ferritin/DPS domainDomain
A, B, C, D, E
IPR001519FerritinFamily
A, B, C, D, E
IPR014034Ferritin, conserved siteConserved Site