6LRG | pdb_00006lrg

Crystal Structure of the Ternary Complex of AgrE with Ornithine and NAD+


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BCOG1915_1ste6lrgB3 A: beta barrelsX: MMP1218-like (From Topology)H: MMP1218-like (From Topology)T: MMP1218-likeF: COG1915_1stECOD (1.6)
BSaccharop_dh_Ne6lrgB4 A: a+b two layersX: Alpha-beta plaitsH: MJ1480-like (From Topology)T: MJ1480-likeF: Saccharop_dh_NECOD (1.6)
BAmidinotransfe6lrgB1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: AmidinotransfECOD (1.6)
BCOG1915_2nde6lrgB2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: DHS-like NAD/FAD-binding domainF: COG1915_2ndECOD (1.6)
ACOG1915_1ste6lrgA4 A: beta barrelsX: MMP1218-like (From Topology)H: MMP1218-like (From Topology)T: MMP1218-likeF: COG1915_1stECOD (1.6)
ASaccharop_dh_Ne6lrgA3 A: a+b two layersX: Alpha-beta plaitsH: MJ1480-like (From Topology)T: MJ1480-likeF: Saccharop_dh_NECOD (1.6)
AAmidinotransfe6lrgA1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: AmidinotransfECOD (1.6)
ACOG1915_2nde6lrgA2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: DHS-like NAD/FAD-binding domainF: COG1915_2ndECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21570Arginine dihydrolase ArgZ-like, C-terminal, Rossmann fold (ArgZ-like_C_2nd)Arginine dihydrolase ArgZ-like, C-terminal, Rossmann foldThis domain is found at the C-terminal end of Arginine dihydrolase ArgZ from Synechocystis sp (also known as Sll1336 protein) and similar prokaryotic sequences. ArgZ is involved in an ornithine- ammonia cycle (OAC) in cyanobacteria, which confers sub ...This domain is found at the C-terminal end of Arginine dihydrolase ArgZ from Synechocystis sp (also known as Sll1336 protein) and similar prokaryotic sequences. ArgZ is involved in an ornithine- ammonia cycle (OAC) in cyanobacteria, which confers substantial adaptability under environmental nitrogen fluctuations. This protein is organised into three domains: a N-terminal domain belonging to the guanidino group-modifying enzyme (GME) family, a middle oxoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (Pfam:PF04455) and a C-terminal uncharacterized region that can be divided in two subdomains. This entry represents the most C-terminal region, which forms a large Rossmann fold domain. Its specific function is unknown [1].
Domain
A, B
PF19420N,N dimethylarginine dimethylhydrolase, eukaryotic (DDAH_eukar)N,N dimethylarginine dimethylhydrolase, eukaryoticThis family contains N(G),N(G)-dimethylarginine dimethylaminohydrolases (DDAH) from eukaryotes. It also includes arginine deiminases and DDAH from prokaryotes. These enzymes are involved in arginine metabolism and belong to the amidinotransferase (AT ...This family contains N(G),N(G)-dimethylarginine dimethylaminohydrolases (DDAH) from eukaryotes. It also includes arginine deiminases and DDAH from prokaryotes. These enzymes are involved in arginine metabolism and belong to the amidinotransferase (AT) superfamily as they share the alpha/beta propeller fold, which includes structurally important residues (buried hydrophobic residues, buried hydrophilic residues hydrogen-bonded with mainchain groups and the hallmark of three consecutive buried Gly residues near the C-terminus, conserved among its members [1,2].
Domain
A, B
PF21571Arginine dihydrolase ArgZ-like, C-terminal, first region (ArgZ-like_C_1st)Arginine dihydrolase ArgZ-like, C-terminal, first regionThis domain is found at the C-terminal end of Arginine dihydrolase ArgZ from Synechocystis sp (also known as Sll1336 protein) and similar prokaryotic sequences. ArgZ is involved in an ornithine- ammonia cycle (OAC) in cyanobacteria, which confers sub ...This domain is found at the C-terminal end of Arginine dihydrolase ArgZ from Synechocystis sp (also known as Sll1336 protein) and similar prokaryotic sequences. ArgZ is involved in an ornithine- ammonia cycle (OAC) in cyanobacteria, which confers substantial adaptability under environmental nitrogen fluctuations. This protein is organised into three domains: a N-terminal domain belonging to the guanidino group-modifying enzyme (GME) family, a middle oxoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (Pfam:PF04455) and a C-terminal uncharacterized region that can be divided in two subdomains. This entry represents the small first region of the C-terminal domain, which folds into beta-strands. Its specific function is unknown [1].
Domain
A, B
PF04455LOR/SDH bifunctional enzyme conserved region (Saccharop_dh_N)LOR/SDH bifunctional enzyme conserved region- Family