6LK8 | pdb_00006lk8

Structure of Xenopus laevis Cytoplasmic Ring subunit.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
X [auth b]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8105019 3002276 SCOP2B (2022-06-29)
BSCOP2 FamilyNucleoporin NUP85 8105018 4006614 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyCoat and nuclear envelope proteins 8105019 3002276 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IPHDe6lk8I01 A: a/b three-layered sandwichesX: Rossmann-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PHDECOD (v294.1)
HWD40e6lk8H1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: WD40ECOD (v294.1)
DA [auth h]DHDPSe6lk8h1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (v294.1)
GPHDe6lk8G01 A: a/b three-layered sandwichesX: Rossmann-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PHDECOD (v294.1)
FWD40e6lk8F1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: WD40ECOD (v294.1)
BA [auth f]DHDPSe6lk8f1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (v294.1)
EWD40e6lk8E1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: WD40ECOD (v294.1)
AA [auth e]e6lk8e1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
Z [auth d]DHDPSe6lk8d1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (v294.1)
DWD40e6lk8D1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: WD40ECOD (v294.1)
Y [auth c]WD40e6lk8c1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: WD40ECOD (v294.1)
CDHDPSe6lk8C1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (v294.1)
X [auth b]e6lk8b1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
Be6lk8B1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
N [auth V]DHDPSe6lk8V1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (v294.1)
M [auth U]Myb_DNA-bindinge6lk8U1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Myb_DNA-bindingECOD (v294.1)
L [auth T]DHDPSe6lk8T1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (v294.1)
K [auth S]DHDPSe6lk8S1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (v294.1)
JDHDPSe6lk8J1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (v294.1)
FA [auth j]e6lk8j1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
EA [auth i],
I
PF04121Nuclear pore protein 84 / 107 (Nup84_Nup100)Nuclear pore protein 84 / 107- Family
DA [auth h],
H
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
BA [auth f],
F
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
D,
Z [auth d]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
C,
Y [auth c]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
B,
X [auth b]
PF07575Nup85 Nucleoporin (Nucleopor_Nup85)Nup85 Nucleoporin- Repeat
FA [auth j],
J
PF03177Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C)Non-repetitive/WGA-negative nucleoporin C-terminal- Repeat
FA [auth j],
J
PF08801Nup133 N terminal like (Nucleoporin_N)Nup133 N terminal like- Repeat
A,
W [auth a]
PF11894Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192)Nuclear pore complex scaffold, nucleoporins 186/192/205- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
EA [auth i],
I
Nuclear pore complex protein
DA [auth h],
H
GATOR complex protein SEC13
CA [auth g],
G
Nuclear pore complex protein Nup96---
BA [auth f],
F
MGC83926 protein-
AA [auth e],
E
outer Nup160---
D,
Z [auth d]
Nucleoporin SEH1-A
C,
Y [auth c]
MGC154553 protein- -
B,
X [auth b]
Nuclear pore complex protein Nup85
U [auth Q],
V [auth R]
bridge domain---
T [auth P]Nup214 complex Coiled coil region 2, helix 3---
S [auth O]Nup214 complex Coiled coil region 2, helix 2---
R [auth N]Nup214 complex Coiled coil region 2, helix 1---
Q [auth M]Nup214 complex coiled coil region 1, helix 3---
P [auth L]Nup214 complex coiled coil region 1, helix 2---
O [auth K]Nup214 complex Coiled-coil region 1, helix 1---
K [auth S],
L [auth T],
M [auth U],
N [auth V]
Nup358 complex, clamps
FA [auth j],
J
outer Nup133
A,
W [auth a]
MGC83295 protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
EA [auth i],
I
IPR007252Nuclear pore protein 84/107Family
DA [auth h],
H
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DA [auth h],
H
IPR037363Sec13/Seh1 familyFamily
DA [auth h],
H
IPR001680WD40 repeatRepeat
DA [auth h],
H
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BA [auth f],
F
IPR037626Nucleoporin Nup37Family
BA [auth f],
F
IPR001680WD40 repeatRepeat
BA [auth f],
F
IPR019775WD40 repeat, conserved siteConserved Site
BA [auth f],
F
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth f],
F
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D,
Z [auth d]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D,
Z [auth d]
IPR037363Sec13/Seh1 familyFamily
D,
Z [auth d]
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
D,
Z [auth d]
IPR001680WD40 repeatRepeat
D,
Z [auth d]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C,
Y [auth c]
IPR001680WD40 repeatRepeat
C,
Y [auth c]
IPR019775WD40 repeat, conserved siteConserved Site
C,
Y [auth c]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C,
Y [auth c]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B,
X [auth b]
IPR011502Nucleoporin Nup85-likeFamily
K [auth S],
L [auth T],
M [auth U],
N [auth V]
IPR036443Zinc finger, RanBP2-type superfamilyHomologous Superfamily
K [auth S],
L [auth T],
M [auth U],
N [auth V]
IPR022011Nup358/RanBP2 E3 ligase domainDomain
K [auth S],
L [auth T],
M [auth U],
N [auth V]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
K [auth S],
L [auth T],
M [auth U],
N [auth V]
IPR011993PH-like domain superfamilyHomologous Superfamily
K [auth S],
L [auth T],
M [auth U],
N [auth V]
IPR000156Ran binding domainDomain
K [auth S],
L [auth T],
M [auth U],
N [auth V]
IPR019734Tetratricopeptide repeatRepeat
K [auth S],
L [auth T],
M [auth U],
N [auth V]
IPR001876Zinc finger, RanBP2-typeDomain
K [auth S],
L [auth T],
M [auth U],
N [auth V]
IPR045255Ran binding protein RanBP1-likeFamily
FA [auth j],
J
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
FA [auth j],
J
IPR037624Nuclear pore complex protein Nup133-likeFamily
FA [auth j],
J
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
FA [auth j],
J
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
A,
W [auth a]
IPR021827Nucleoporin Nup186/Nup192/Nup205Family