Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6l9za_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H3 Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed6l9ze_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H3 Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd6l9zk_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H3 Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Od6l9zo_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H3 Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6l9zf_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H4 Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Pd6l9zp_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H4 Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd6l9zb_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H4 Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld6l9zl_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H4 Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd6l9zg_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H2A Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Qd6l9zq_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H2A Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd6l9zc_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H2A Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Md6l9zm_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H2A Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd6l9zd_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd6l9zh_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Nd6l9zn_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Rd6l9zr_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Sd6l9zs_ All alpha proteins DNA/RNA-binding 3-helical bundle 'Winged helix' DNA-binding domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCore histone-like8039340 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like8039340 3001387 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyCore histone-like8039340 3001387 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyCore histone-like8039340 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like8070545 3001387 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyCore histone-like8070545 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like8070545 3001387 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyCore histone-like8070545 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like8039342 3001387 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyCore histone-like8039342 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like8039342 3001387 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyCore histone-like8039342 3001387 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyWinged helix DNA-binding domain8070517 3000034 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AHistonee6l9zA1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
EHistonee6l9zE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
KHistonee6l9zK1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
OHistonee6l9zO1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
FHistone_1e6l9zF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
PHistone_1e6l9zP1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
BHistone_1e6l9zB1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
LHistone_1e6l9zL1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
GHistone_1e6l9zG1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
QHistone_1e6l9zQ1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
CHistone_1e6l9zC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
MHistone_1e6l9zM1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
DHistonee6l9zD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
HHistonee6l9zH1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
NHistonee6l9zN1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
RHistonee6l9zR1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
SLinker_histonee6l9zS1 A: alpha arraysX: HTHH: HTHT: wingedF: Linker_histoneECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, E, K, O
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
B, F, L, P
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
C, G, M, Q
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
C, G, M, Q
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
D, H, N, R
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
PF00538linker histone H1 and H5 family (Linker_histone)linker histone H1 and H5 familyLinker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E, K, O
Histone H3.1
B, F, L, P
Histone H4
C, G, M, Q
Histone H2A type 1-B/E
D, H, N, R
Histone H2B type 1-J
DNA (338-MER)---
DNA (338-MER)---
Histone H1x

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, E, K, O
PharosP68431
B, F, L, P
PharosP62805
C, G, M, Q
PharosP04908
D, H, N, R
PharosP06899
PharosQ92522