6L35 | pdb_00006l35

PSI-LHCI Supercomplex from Physcometrella patens


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2 FamilySubunit VIII of photosystem I reaction centre, PsaI 8102490 4002098 SCOP2 (2022-06-29)
ISCOP2 SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8102491 3000819 SCOP2 (2022-06-29)
HSCOP2 FamilyPhotosystem I reaction centre subunit VI 8102646 4007266 SCOP2 (2022-06-29)
HSCOP2 SuperfamilyPhotosystem I reaction centre subunit VI 8102647 3002733 SCOP2 (2022-06-29)
FSCOP2 FamilySubunit III of photosystem I reaction centre, PsaF 8102304 4002091 SCOP2 (2022-06-29)
FSCOP2 SuperfamilySubunit III of photosystem I reaction centre, PsaF 8102305 3000813 SCOP2 (2022-06-29)
ESCOP2 FamilyPhotosystem I accessory protein E (PsaE) 8102302 4001749 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyElectron transport accessory proteins 8102303 3000325 SCOP2 (2022-06-29)
DSCOP2 FamilyPhotosystem I subunit PsaD 8102342 4003498 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyPhotosystem I subunit PsaD 8102343 3000951 SCOP2 (2022-06-29)
CSCOP2 Family7-Fe ferredoxin 8102488 4001227 SCOP2 (2022-06-29)
CSCOP2 Superfamily4Fe-4S ferredoxins 8102489 3000020 SCOP2 (2022-06-29)
BSCOP2 FamilyPhotosystem I subunits PsaA/PsaB 8102494 4002118 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB 8102495 3000850 SCOP2 (2022-06-29)
Q [auth 5]SCOP2 FamilyChlorophyll a-b binding protein 8102308 4001763 SCOP2 (2022-06-29)
Q [auth 5]SCOP2 SuperfamilyChlorophyll a-b binding protein 8102309 3000343 SCOP2 (2022-06-29)
P [auth 3]SCOP2 FamilyChlorophyll a-b binding protein 8102346 4001763 SCOP2 (2022-06-29)
P [auth 3]SCOP2 SuperfamilyChlorophyll a-b binding protein 8102347 3000343 SCOP2 (2022-06-29)
O [auth 6]SCOP2 FamilyChlorophyll a-b binding protein 8102344 4001763 SCOP2 (2022-06-29)
O [auth 6]SCOP2 SuperfamilyChlorophyll a-b binding protein 8102345 3000343 SCOP2 (2022-06-29)
N [auth 2]SCOP2 FamilyChlorophyll a-b binding protein 8102306 4001763 SCOP2 (2022-06-29)
N [auth 2]SCOP2 SuperfamilyChlorophyll a-b binding protein 8102307 3000343 SCOP2 (2022-06-29)
MSCOP2 FamilySubunit XII of photosystem I reaction centre, PsaM 8102484 4002104 SCOP2 (2022-06-29)
MSCOP2 SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8102485 3000829 SCOP2 (2022-06-29)
LSCOP2 FamilyPhotosystem I reaction center subunit XI, PsaL 8102340 4002135 SCOP2 (2022-06-29)
LSCOP2 SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8102341 3000870 SCOP2 (2022-06-29)
JSCOP2 FamilySubunit IX of photosystem I reaction centre, PsaJ 8102486 4002101 SCOP2 (2022-06-29)
JSCOP2 SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8102487 3000824 SCOP2 (2022-06-29)
ASCOP2 FamilyPhotosystem I subunits PsaA/PsaB 8102496 4002118 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB 8102497 3000850 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IEpimerasee6l35I1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
HEpimerasee6l35H1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
GEpimerasee6l35G1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
FEpimerasee6l35F1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
EEpimerasee6l35E1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
DEpimerasee6l35D1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
CEpimerasee6l35C1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
BEpimerasee6l35B1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
Q [auth 5]Epimerasee6l3551 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
P [auth 3]Epimerasee6l3531 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
O [auth 6]Epimerasee6l3561 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
N [auth 2]Epimerasee6l3521 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
MEpimerasee6l35M1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
LEpimerasee6l35L1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
KEpimerasee6l35K1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
JEpimerasee6l35J1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)
AEpimerasee6l35A1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EpimeraseECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
PF03244Photosystem I reaction centre subunit VI (PSI_PsaH)Photosystem I reaction centre subunit VI- Family
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
PF02531PsaD (PsaD)PsaD- Family
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
Q [auth 5]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
P [auth 3]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
O [auth 6]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
N [auth 2]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem I reaction center subunit VIII-
PsaH photosystem I reaction center subunit-
Predicted protein PsaG-
PSI-F-
PsaE-
Predicted protein PsaD
Photosystem I iron-sulfur center
Photosystem I P700 chlorophyll a apoprotein A2
Q [auth 5]Chlorophyll a-b binding protein, chloroplastic
P [auth 3]Chlorophyll a-b binding protein, chloroplastic
O [auth 6]Chlorophyll a-b binding protein, chloroplastic
N [auth 2]Chlorophyll a-b binding protein, chloroplastic
Photosystem I reaction center subunit XII-
PSI subunit V-
PsaK-
Photosystem I reaction center subunit IX-
Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
IPR001302Photosystem I reaction centre subunit VIIIFamily
IPR004928Photosystem I PsaH, reaction centre subunit VIFamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR017494Photosystem I reaction center subunit VFamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
IPR003685Photosystem I PsaDFamily
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR050157Photosystem I iron-sulfur centerFamily
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR017491Photosystem I protein PsaCFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006244Photosystem I PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
Q [auth 5]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
Q [auth 5]IPR022796Chlorophyll A-B binding proteinFamily
P [auth 3]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
P [auth 3]IPR022796Chlorophyll A-B binding proteinFamily
O [auth 6]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
O [auth 6]IPR022796Chlorophyll A-B binding proteinFamily
N [auth 2]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
N [auth 2]IPR022796Chlorophyll A-B binding proteinFamily
IPR010010Photosystem I PsaM, reaction centreFamily
IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
IPR022980Photosystem I, reaction centre subunit XIFamily
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR017493Photosystem I reaction center subunit psaK, plantFamily
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
IPR006243Photosystem I PsaAFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, E, F
OPMTransmembraneAlpha-helical polytopicPhotosystemsPhotosystem I

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, E, F
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, E, F
MemProtMDAnnotated as membrane protein by MemProtMD