6KWA | pdb_00006kwa

AtDAO1(dioxygenase for auxin oxidation 1 from Arabidopsis thaliana)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d6kwac_	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
B	d6kwab_	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
A	d6kwaa_	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Clavaminate synthase-like	8101755	3001848	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Clavaminate synthase-like	8101755	3001848	SCOP2B (2022-06-29)
A	SCOP2 Family	Penicillin synthase-like	8101754	4002884	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Clavaminate synthase-like	8101755	3001848	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	EF-hand_7	e6kwaC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EF-hand_7	ECOD (v294.1)
B	EF-hand_7	e6kwaB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EF-hand_7	ECOD (v294.1)
A	EF-hand_7	e6kwaA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EF-hand_7	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.60.120.330	Mainly Beta	Sandwich	Jelly Rolls	B-lactam Antibiotic, Isopenicillin N Synthase	CATH (utative)
B	2.60.120.330	Mainly Beta	Sandwich	Jelly Rolls	B-lactam Antibiotic, Isopenicillin N Synthase	CATH (utative)
A	2.60.120.330	Mainly Beta	Sandwich	Jelly Rolls	B-lactam Antibiotic, Isopenicillin N Synthase	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF03171	2OG-Fe(II) oxygenase superfamily (2OG-FeII_Oxy)	2OG-Fe(II) oxygenase superfamily	This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [1]. This family includes the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity EC:1.14.11.2 catalysing the reactio ...	This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [1]. This family includes the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity EC:1.14.11.2 catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 <=> procollagen trans- 4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site [3]. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB.	Domain
A, B, C	PF14226	non-haem dioxygenase in morphine synthesis N-terminal (DIOX_N)	non-haem dioxygenase in morphine synthesis N-terminal	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	oxidoreductase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 2-oxoglutarate-dependent dioxygenase activity catalytic activity dioxygenase activity indole-3-acetaldehyde oxidase activity aldehyde oxidase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors aryl-aldehyde oxidase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor cation binding ion binding binding metal ion binding oxidoreductase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 2-oxoglutarate-dependent dioxygenase activity catalytic activity dioxygenase activity indole-3-acetaldehyde oxidase activity aldehyde oxidase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors aryl-aldehyde oxidase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor cation binding ion binding binding metal ion binding small molecule binding	cellular homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis intracellular auxin homeostasis catabolic process auxin metabolic process regulation of hormone levels biological regulation metabolic process cellular process regulation of biological quality hormone metabolic process hormone catabolic process cellular homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis intracellular auxin homeostasis catabolic process auxin metabolic process regulation of hormone levels biological regulation metabolic process cellular process regulation of biological quality hormone metabolic process hormone catabolic process auxin catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR050231	Iron_ascorbate_oxido_reductase	Unknown
A, B, C	IPR026992	Non-haem dioxygenase, N-terminal domain	Domain
A, B, C	IPR005123	Oxoglutarate/iron-dependent dioxygenase domain	Domain
A, B, C	IPR027443	Isopenicillin N synthase-like superfamily	Homologous Superfamily
A, B, C	IPR044861	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.