6KRB | pdb_00006krb

High resolution crystal structure of an Acylphosphatase protein cage

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d6krbc_	Alpha and beta proteins (a+b)	Ferredoxin-like	Acylphosphatase/BLUF domain-like	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
L	d6krbl_	Alpha and beta proteins (a+b)	Ferredoxin-like	Acylphosphatase/BLUF domain-like	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
K	d6krbk_	Alpha and beta proteins (a+b)	Ferredoxin-like	Acylphosphatase/BLUF domain-like	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
J	d6krbj_	Alpha and beta proteins (a+b)	Ferredoxin-like	Acylphosphatase/BLUF domain-like	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
I	d6krbi_	Alpha and beta proteins (a+b)	Ferredoxin-like	Acylphosphatase/BLUF domain-like	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
H	d6krbh_	Alpha and beta proteins (a+b)	Ferredoxin-like	Acylphosphatase/BLUF domain-like	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
G	d6krbg_	Alpha and beta proteins (a+b)	Ferredoxin-like	Acylphosphatase/BLUF domain-like	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
F	d6krbf_	Alpha and beta proteins (a+b)	Ferredoxin-like	Acylphosphatase/BLUF domain-like	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
E	d6krbe_	Alpha and beta proteins (a+b)	Ferredoxin-like	Acylphosphatase/BLUF domain-like	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
D	d6krbd_	Alpha and beta proteins (a+b)	Ferredoxin-like	Acylphosphatase/BLUF domain-like	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
B	d6krbb_	Alpha and beta proteins (a+b)	Ferredoxin-like	Acylphosphatase/BLUF domain-like	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
A	d6krba_	Alpha and beta proteins (a+b)	Ferredoxin-like	Acylphosphatase/BLUF domain-like	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8069955	3000165	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8069955	3000165	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8069955	3000165	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8069955	3000165	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8069955	3000165	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8069955	3000165	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8069955	3000165	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8069955	3000165	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8069955	3000165	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8069955	3000165	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8069955	3000165	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Acylphosphatase/BLUF domain-like	8069955	3000165	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Acylphosphatase	e6krbC1	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: Acylphosphatase	ECOD (1.6)
L	Acylphosphatase	e6krbL1	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: Acylphosphatase	ECOD (1.6)
K	Acylphosphatase	e6krbK1	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: Acylphosphatase	ECOD (1.6)
J	Acylphosphatase	e6krbJ1	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: Acylphosphatase	ECOD (1.6)
I	Acylphosphatase	e6krbI1	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: Acylphosphatase	ECOD (1.6)
H	Acylphosphatase	e6krbH1	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: Acylphosphatase	ECOD (1.6)
G	Acylphosphatase	e6krbG1	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: Acylphosphatase	ECOD (1.6)
F	Acylphosphatase	e6krbF1	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: Acylphosphatase	ECOD (1.6)
E	Acylphosphatase	e6krbE1	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: Acylphosphatase	ECOD (1.6)
D	Acylphosphatase	e6krbD1	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: Acylphosphatase	ECOD (1.6)
B	Acylphosphatase	e6krbB1	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: Acylphosphatase	ECOD (1.6)
A	Acylphosphatase	e6krbA1	A: a+b two layers	X: Alpha-beta plaits	H: Acylphosphatase-like (From Topology)	T: Acylphosphatase-like	F: Acylphosphatase	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
L	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
K	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
J	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
I	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
H	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
G	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
F	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
E	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
D	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
B	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
A	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00708	Acylphosphatase (Acylphosphatase)	Acylphosphatase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Acylphosphatase	pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides acylphosphatase activity hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR020456	Acylphosphatase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036046	Acylphosphatase-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR017968	Acylphosphatase, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001792	Acylphosphatase-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.