6KAC | pdb_00006kac

Cryo-EM structure of the C2S2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6kaca_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
DA [auth b]d6kacb_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
E [auth D]d6kacd_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
HA [auth e]d6kace_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
IA [auth f]d6kacf_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
JA [auth h]d6kach_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II 10 kDa phosphoprotein PsbH automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Jd6kacj_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein J, PsbJ automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
MA [auth k]d6kack_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein K, PsbK PsbK-like automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
OA [auth m]d6kacm_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein M, PsbM PsbM-like automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
PA [auth o]d6kaco_ Membrane and cell surface proteins and peptides Transmembrane beta-barrels OMPA-like automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
QA [auth p]d6kacp_ Alpha and beta proteins (a+b) Mog1p/PsbP-like Mog1p/PsbP-like automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
T [auth Z]d6kacz_ Membrane and cell surface proteins and peptides Transmembrane helix hairpin PsbZ-like automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
WA [auth n]d6kacn_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
V [auth G]d6kacg_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
X [auth S]d6kacs_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
AB [auth y]d6kacy_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
D [auth C]d6kacc_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8094419 3000736 SCOP2B (2022-06-29)
CA [auth a]SCOP2 FamilyBacterial photosystem II reaction centre, L and M subunits 8094418 4002035 SCOP2 (2022-06-29)
CA [auth a]SCOP2 SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8094419 3000736 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyPhotosystem II antenna protein-like 8094573 3001674 SCOP2B (2022-06-29)
DA [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8094573 3001674 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8094383 3000736 SCOP2B (2022-06-29)
GA [auth d]SCOP2 FamilyBacterial photosystem II reaction centre, L and M subunits 8094382 4002035 SCOP2 (2022-06-29)
GA [auth d]SCOP2 SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8094383 3000736 SCOP2 (2022-06-29)
F [auth E]SCOP2B SuperfamilyCytochrome b559 subunits 8094631 3001602 SCOP2B (2022-06-29)
HA [auth e]SCOP2B SuperfamilyCytochrome b559 subunits 8094631 3001602 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyCytochrome b559 subunits 8093904 3001602 SCOP2B (2022-06-29)
IA [auth f]SCOP2 FamilyCytochrome b559 subunits 8093903 4002681 SCOP2 (2022-06-29)
IA [auth f]SCOP2 SuperfamilyCytochrome b559 subunits 8093904 3001602 SCOP2 (2022-06-29)
HSCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8094651 3001547 SCOP2B (2022-06-29)
JA [auth h]SCOP2 FamilyPsbH-like 8094650 4002649 SCOP2 (2022-06-29)
JA [auth h]SCOP2 SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8094651 3001547 SCOP2 (2022-06-29)
ISCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8094000 3001590 SCOP2B (2022-06-29)
KA [auth i]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8094000 3001590 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8094937 3001534 SCOP2B (2022-06-29)
LA [auth j]SCOP2 FamilyPsbJ-like 8094936 4002642 SCOP2 (2022-06-29)
LA [auth j]SCOP2 SuperfamilyPhotosystem II reaction center protein J, PsbJ 8094937 3001534 SCOP2 (2022-06-29)
KSCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8093946 3001585 SCOP2B (2022-06-29)
MA [auth k]SCOP2 FamilyPsbK-like 8093945 4002673 SCOP2 (2022-06-29)
MA [auth k]SCOP2 SuperfamilyPhotosystem II reaction center protein K, PsbK 8093946 3001585 SCOP2 (2022-06-29)
LSCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8094509 3001523 SCOP2B (2022-06-29)
NA [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8094509 3001523 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8094094 3001573 SCOP2B (2022-06-29)
OA [auth m]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8094094 3001573 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyOMPA barrel-like 8095525 3000208 SCOP2B (2022-06-29)
PA [auth o]SCOP2 FamilyPsbO-like 8095524 4002770 SCOP2 (2022-06-29)
PA [auth o]SCOP2 SuperfamilyOMPA barrel-like 8095525 3000208 SCOP2 (2022-06-29)
O [auth P]SCOP2B SuperfamilyMog1p/PsbP-like 8095153 3000396 SCOP2B (2022-06-29)
QA [auth p]SCOP2 FamilyPsbP-like 8095152 4002692 SCOP2 (2022-06-29)
QA [auth p]SCOP2 SuperfamilyMog1p/PsbP-like 8095153 3000396 SCOP2 (2022-06-29)
T [auth Z]SCOP2B SuperfamilyPsbZ-like 8094160 3001624 SCOP2B (2022-06-29)
VA [auth z]SCOP2B SuperfamilyPsbZ-like 8094160 3001624 SCOP2B (2022-06-29)
U [auth N]SCOP2B SuperfamilyChlorophyll a-b binding protein 8094579 3000343 SCOP2B (2022-06-29)
WA [auth n]SCOP2B SuperfamilyChlorophyll a-b binding protein 8094579 3000343 SCOP2B (2022-06-29)
V [auth G]SCOP2B SuperfamilyChlorophyll a-b binding protein 8094615 3000343 SCOP2B (2022-06-29)
XA [auth g]SCOP2 FamilyChlorophyll a-b binding protein 8094614 4001763 SCOP2 (2022-06-29)
XA [auth g]SCOP2 SuperfamilyChlorophyll a-b binding protein 8094615 3000343 SCOP2 (2022-06-29)
X [auth S]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100486 3000343 SCOP2B (2022-06-29)
ZA [auth s]SCOP2 FamilyChlorophyll a-b binding protein 8100485 4001763 SCOP2 (2022-06-29)
ZA [auth s]SCOP2 SuperfamilyChlorophyll a-b binding protein 8100486 3000343 SCOP2 (2022-06-29)
AB [auth y]SCOP2B SuperfamilyChlorophyll a-b binding protein 8094539 3000343 SCOP2B (2022-06-29)
YSCOP2 FamilyChlorophyll a-b binding protein 8094538 4001763 SCOP2 (2022-06-29)
YSCOP2 SuperfamilyChlorophyll a-b binding protein 8094539 3000343 SCOP2 (2022-06-29)
D [auth C]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8094477 3001674 SCOP2B (2022-06-29)
FA [auth c]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8094477 3001674 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APhoto_RCe6kacA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
CA [auth a]Photo_RCe6kaca1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
BPSII_1ste6kacB2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
BPSII_2nde6kacB1 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
DA [auth b]PSII_1ste6kacb1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
DA [auth b]PSII_2nde6kacb2 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
C [auth V]PSII_Ycf12e6kacV1 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PSII_Ycf12ECOD (1.6)
EA [auth v]PSII_Ycf12e6kacv1 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PSII_Ycf12ECOD (1.6)
E [auth D]Photo_RCe6kacD1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
GA [auth d]Photo_RCe6kacd1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
F [auth E]Cytochrom_B559ae6kacE1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
HA [auth e]Cytochrom_B559ae6kace1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
G [auth F]Cytochrom_B559e6kacF1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
IA [auth f]Cytochrom_B559e6kacf1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
HPsbHe6kacH1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
JA [auth h]PsbHe6kach1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
IPsbIe6kacI1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
KA [auth i]PsbIe6kaci1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
JPsbJe6kacJ1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)
LA [auth j]PsbJe6kacj1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)
KPsbKe6kacK1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
MA [auth k]PsbKe6kack1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
LPsbLe6kacL1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
NA [auth l]PsbLe6kacl1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
MPsbMe6kacM1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
OA [auth m]PsbMe6kacm1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
N [auth O]MSPe6kacO1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
PA [auth o]MSPe6kaco1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
O [auth P]PsbPe6kacP1 A: a+b three layersX: Mog1p/PsbP-likeH: Mog1p/PsbP-like (From Topology)T: Mog1p/PsbP-likeF: PsbPECOD (1.6)
QA [auth p]PsbPe6kacp1 A: a+b three layersX: Mog1p/PsbP-likeH: Mog1p/PsbP-like (From Topology)T: Mog1p/PsbP-likeF: PsbPECOD (1.6)
Q [auth T]PsbTe6kacT1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
SA [auth t]PsbTe6kact1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
S [auth X]PsbXe6kacX1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
UA [auth x]PsbXe6kacx1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
T [auth Z]Ycf9e6kacZ1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: Ycf9ECOD (1.6)
VA [auth z]Ycf9e6kacz1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: Ycf9ECOD (1.6)
U [auth N]Chloroa_b-binde6kacN1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
WA [auth n]Chloroa_b-binde6kacn1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
V [auth G]Chloroa_b-binde6kacG1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
XA [auth g]Chloroa_b-binde6kacg1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
W [auth R]Chloroa_b-binde6kacR1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
YA [auth r]Chloroa_b-binde6kacr1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
X [auth S]Chloroa_b-binde6kacS1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
ZA [auth s]Chloroa_b-binde6kacs1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
AB [auth y]Chloroa_b-binde6kacy1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
YChloroa_b-binde6kacY1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
D [auth C]PSII_1ste6kacC1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
FA [auth c]PSII_1ste6kacc1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
R [auth W]PsbWe6kacW1 A: extended segmentsX: Photosystem II reaction center W protein, chloroplastic (From Topology)H: Photosystem II reaction center W protein, chloroplastic (From Topology)T: Photosystem II reaction center W protein, chloroplasticF: PsbWECOD (1.6)
TA [auth w]PsbWe6kacw1 A: extended segmentsX: Photosystem II reaction center W protein, chloroplastic (From Topology)H: Photosystem II reaction center W protein, chloroplastic (From Topology)T: Photosystem II reaction center W protein, chloroplasticF: PsbWECOD (1.6)
P [auth Q]PsbQe6kacQ1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PsbQECOD (1.6)
RA [auth q]PsbQe6kacq1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PsbQECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (utative)
DA [auth b]3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (utative)
F [auth E]1.20.5.860 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II cytochrome b559, alpha subunitCATH (utative)
HA [auth e]1.20.5.860 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II cytochrome b559, alpha subunitCATH (utative)
H1.20.5.880 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II reaction center protein HCATH (utative)
JA [auth h]1.20.5.880 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II reaction center protein HCATH (utative)
O [auth P]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (utative)
QA [auth p]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (utative)
T [auth Z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (utative)
VA [auth z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (utative)
D [auth C]1.10.10.670 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A photosystem ii from thermosynechococcus elongatusCATH (utative)
FA [auth c]1.10.10.670 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A photosystem ii from thermosynechococcus elongatusCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
CA [auth a]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
E [auth D],
GA [auth d]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
F [auth E],
HA [auth e]
PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
H,
JA [auth h]
PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
I,
KA [auth i]
PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
Q [auth T],
SA [auth t]
PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
S [auth X],
UA [auth x]
PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
T [auth Z],
VA [auth z]
PF01737YCF9 (Ycf9)YCF9- Family
U [auth N],
WA [auth n]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
V [auth G],
XA [auth g]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
X [auth S],
ZA [auth s]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
AB [auth y],
Y
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
D [auth C],
FA [auth c]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
CA [auth a]
Photosystem II protein D1
B,
DA [auth b]
Photosystem II CP47 reaction center protein
C [auth V],
EA [auth v]
Photosystem II reaction center protein Ycf12-
E [auth D],
GA [auth d]
Photosystem II D2 protein
F [auth E],
HA [auth e]
Cytochrome b559 subunit alpha
G [auth F],
IA [auth f]
Cytochrome b559 subunit beta
H,
JA [auth h]
Photosystem II reaction center protein H
I,
KA [auth i]
Photosystem II reaction center protein I-
J,
LA [auth j]
Photosystem II reaction center protein J-
K,
MA [auth k]
Photosystem II reaction center protein K-
L,
NA [auth l]
Photosystem II reaction center protein L-
M,
OA [auth m]
Photosystem II reaction center protein M-
N [auth O],
PA [auth o]
Oxygen-evolving enhancer protein 1, chloroplastic
O [auth P],
QA [auth p]
Oxygen-evolving enhancer protein 2, chloroplastic
Q [auth T],
SA [auth t]
Photosystem II reaction center protein T-
S [auth X],
UA [auth x]
4.1 kDa photosystem II subunit-
T [auth Z],
VA [auth z]
Photosystem II reaction center protein Z-
U [auth N],
WA [auth n]
Chlorophyll a-b binding protein, chloroplastic
V [auth G],
XA [auth g]
Chlorophyll a-b binding protein, chloroplastic
W [auth R],
YA [auth r]
Chlorophyll a-b binding protein CP29
X [auth S],
ZA [auth s]
Chlorophyll a-b binding protein, chloroplastic
AB [auth y],
Y
Chlorophyll a-b binding protein, chloroplastic
BB [auth u],
Z [auth U]
Predicted protein-
AA [auth 1],
CB [auth 0]
10 kDa photosystem II polypeptide PsbR (potential)---
BA [auth 4],
DB [auth 3]
Unindentified Stromal Protein (USP)---
D [auth C],
FA [auth c]
Photosystem II CP43 reaction center protein
R [auth W],
TA [auth w]
Photosystem II reaction center W protein, chloroplastic-
P [auth Q],
RA [auth q]
Oxygen-evolving enhancer protein 3, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
CA [auth a]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
CA [auth a]
IPR005867Photosystem II protein D1Family
A,
CA [auth a]
IPR000484Photosynthetic reaction centre, L/MFamily
A,
CA [auth a]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A,
CA [auth a]
IPR055266Photosystem II protein D1/D2Family
B,
DA [auth b]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
DA [auth b]
IPR000932Photosystem antenna protein-likeFamily
B,
DA [auth b]
IPR017486Photosystem II CP47 reaction centre proteinFamily
C [auth V],
EA [auth v]
IPR010284Photosystem II reaction center protein Ycf12Family
E [auth D],
GA [auth d]
IPR005868Photosystem II D2Family
E [auth D],
GA [auth d]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
E [auth D],
GA [auth d]
IPR000484Photosynthetic reaction centre, L/MFamily
E [auth D],
GA [auth d]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
E [auth D],
GA [auth d]
IPR055266Photosystem II protein D1/D2Family
F [auth E],
HA [auth e]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
F [auth E],
HA [auth e]
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
F [auth E],
HA [auth e]
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
F [auth E],
HA [auth e]
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
F [auth E],
HA [auth e]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
G [auth F],
IA [auth f]
IPR006241Photosystem II cytochrome b559, beta subunitFamily
G [auth F],
IA [auth f]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
G [auth F],
IA [auth f]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
H,
JA [auth h]
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
H,
JA [auth h]
IPR001056Photosystem II reaction centre protein HFamily
I,
KA [auth i]
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
I,
KA [auth i]
IPR003686Photosystem II PsbIFamily
J,
LA [auth j]
IPR002682Photosystem II PsbJFamily
J,
LA [auth j]
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
K,
MA [auth k]
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
K,
MA [auth k]
IPR003687Photosystem II PsbKFamily
L,
NA [auth l]
IPR003372Photosystem II PsbLFamily
L,
NA [auth l]
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
M,
OA [auth m]
IPR007826Photosystem II PsbMFamily
M,
OA [auth m]
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
N [auth O],
PA [auth o]
IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
N [auth O],
PA [auth o]
IPR002628Photosystem II extrinsic protein OFamily
O [auth P],
QA [auth p]
IPR002683PsbP, C-terminalDomain
O [auth P],
QA [auth p]
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
Q [auth T],
SA [auth t]
IPR001743Photosystem II PsbTFamily
Q [auth T],
SA [auth t]
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
S [auth X],
UA [auth x]
IPR009518Photosystem II PsbXFamily
T [auth Z],
VA [auth z]
IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
T [auth Z],
VA [auth z]
IPR002644Photosystem II PsbZ, reaction centreFamily
U [auth N],
WA [auth n]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
U [auth N],
WA [auth n]
IPR022796Chlorophyll A-B binding proteinFamily
V [auth G],
XA [auth g]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
V [auth G],
XA [auth g]
IPR022796Chlorophyll A-B binding proteinFamily
W [auth R],
YA [auth r]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
W [auth R],
YA [auth r]
IPR022796Chlorophyll A-B binding proteinFamily
X [auth S],
ZA [auth s]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
X [auth S],
ZA [auth s]
IPR022796Chlorophyll A-B binding proteinFamily
AB [auth y],
Y
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
AB [auth y],
Y
IPR022796Chlorophyll A-B binding proteinFamily
BB [auth u],
Z [auth U]
IPR025585Photosystem II Psb27Family
BB [auth u],
Z [auth U]
IPR038450Photosystem II Psb27 superfamilyHomologous Superfamily
D [auth C],
FA [auth c]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
D [auth C],
FA [auth c]
IPR000932Photosystem antenna protein-likeFamily
D [auth C],
FA [auth c]
IPR005869Photosystem II CP43 reaction centre proteinFamily
D [auth C],
FA [auth c]
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
R [auth W],
TA [auth w]
IPR009806Photosystem II PsbW, class 2Family
P [auth Q],
RA [auth q]
IPR008797Oxygen-evolving enhancer protein 3Family
P [auth Q],
RA [auth q]
IPR054099Oxygen-evolving enhancer protein 3, plantsFamily
P [auth Q],
RA [auth q]
IPR023222PsbQ-like domain superfamilyHomologous Superfamily