Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6kaca_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
DA [auth b]d6kacb_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
D [auth C]d6kacc_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
E [auth D]d6kacd_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
HA [auth e]d6kace_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
IA [auth f]d6kacf_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
JA [auth h]d6kach_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II 10 kDa phosphoprotein PsbH automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Jd6kacj_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein J, PsbJ automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
MA [auth k]d6kack_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein K, PsbK PsbK-like automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
OA [auth m]d6kacm_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein M, PsbM PsbM-like automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
PA [auth o]d6kaco_ Membrane and cell surface proteins and peptides Transmembrane beta-barrels OMPA-like automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
QA [auth p]d6kacp_ Alpha and beta proteins (a+b) Mog1p/PsbP-like Mog1p/PsbP-like automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
T [auth Z]d6kacz_ Membrane and cell surface proteins and peptides Transmembrane helix hairpin PsbZ-like automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
WA [auth n]d6kacn_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
V [auth G]d6kacg_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
X [auth S]d6kacs_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
AB [auth y]d6kacy_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8094419 3000736 SCOP2B (2022-06-29)
CA [auth a]SCOP2 FamilyBacterial photosystem II reaction centre L and M subunits8094418 4002035 SCOP2 (2022-06-29)
CA [auth a]SCOP2 SuperfamilyBacterial photosystem II reaction centre L and M subunits8094419 3000736 SCOP2 (2022-06-29)
DA [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like8094573 3001674 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem II antenna protein-like8094573 3001674 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyPhotosystem II antenna protein-like8094477 3001674 SCOP2B (2022-06-29)
FA [auth c]SCOP2B SuperfamilyPhotosystem II antenna protein-like8094477 3001674 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8094383 3000736 SCOP2B (2022-06-29)
GA [auth d]SCOP2 FamilyBacterial photosystem II reaction centre L and M subunits8094382 4002035 SCOP2 (2022-06-29)
GA [auth d]SCOP2 SuperfamilyBacterial photosystem II reaction centre L and M subunits8094383 3000736 SCOP2 (2022-06-29)
F [auth E]SCOP2B SuperfamilyCytochrome b559 subunits8094631 3001602 SCOP2B (2022-06-29)
HA [auth e]SCOP2B SuperfamilyCytochrome b559 subunits8094631 3001602 SCOP2B (2022-06-29)
IA [auth f]SCOP2 FamilyCytochrome b559 subunits8093903 4002681 SCOP2 (2022-06-29)
IA [auth f]SCOP2 SuperfamilyCytochrome b559 subunits8093904 3001602 SCOP2 (2022-06-29)
G [auth F]SCOP2B SuperfamilyCytochrome b559 subunits8093904 3001602 SCOP2B (2022-06-29)
JA [auth h]SCOP2 FamilyPsbH-like8094650 4002649 SCOP2 (2022-06-29)
JA [auth h]SCOP2 SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH8094651 3001547 SCOP2 (2022-06-29)
HSCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH8094651 3001547 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPhotosystem II reaction center protein I PsbI8094000 3001590 SCOP2B (2022-06-29)
KA [auth i]SCOP2B SuperfamilyPhotosystem II reaction center protein I PsbI8094000 3001590 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyPhotosystem II reaction center protein J PsbJ8094937 3001534 SCOP2B (2022-06-29)
LA [auth j]SCOP2 FamilyPsbJ-like8094936 4002642 SCOP2 (2022-06-29)
LA [auth j]SCOP2 SuperfamilyPhotosystem II reaction center protein J PsbJ8094937 3001534 SCOP2 (2022-06-29)
MA [auth k]SCOP2 FamilyPsbK-like8093945 4002673 SCOP2 (2022-06-29)
MA [auth k]SCOP2 SuperfamilyPhotosystem II reaction center protein K PsbK8093946 3001585 SCOP2 (2022-06-29)
KSCOP2B SuperfamilyPhotosystem II reaction center protein K PsbK8093946 3001585 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyPhotosystem II reaction center protein L PsbL8094509 3001523 SCOP2B (2022-06-29)
NA [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L PsbL8094509 3001523 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyPhotosystem II reaction center protein M PsbM8094094 3001573 SCOP2B (2022-06-29)
OA [auth m]SCOP2B SuperfamilyPhotosystem II reaction center protein M PsbM8094094 3001573 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyOMPA barrel-like8095525 3000208 SCOP2B (2022-06-29)
PA [auth o]SCOP2 FamilyPsbO-like8095524 4002770 SCOP2 (2022-06-29)
PA [auth o]SCOP2 SuperfamilyOMPA barrel-like8095525 3000208 SCOP2 (2022-06-29)
O [auth P]SCOP2B SuperfamilyMog1p/PsbP-like8095153 3000396 SCOP2B (2022-06-29)
QA [auth p]SCOP2 FamilyPsbP-like8095152 4002692 SCOP2 (2022-06-29)
QA [auth p]SCOP2 SuperfamilyMog1p/PsbP-like8095153 3000396 SCOP2 (2022-06-29)
T [auth Z]SCOP2B SuperfamilyPsbZ-like8094160 3001624 SCOP2B (2022-06-29)
VA [auth z]SCOP2B SuperfamilyPsbZ-like8094160 3001624 SCOP2B (2022-06-29)
WA [auth n]SCOP2B SuperfamilyChlorophyll a-b binding protein8094579 3000343 SCOP2B (2022-06-29)
U [auth N]SCOP2B SuperfamilyChlorophyll a-b binding protein8094579 3000343 SCOP2B (2022-06-29)
V [auth G]SCOP2B SuperfamilyChlorophyll a-b binding protein8094615 3000343 SCOP2B (2022-06-29)
XA [auth g]SCOP2 FamilyChlorophyll a-b binding protein8094614 4001763 SCOP2 (2022-06-29)
XA [auth g]SCOP2 SuperfamilyChlorophyll a-b binding protein8094615 3000343 SCOP2 (2022-06-29)
X [auth S]SCOP2B SuperfamilyChlorophyll a-b binding protein8100486 3000343 SCOP2B (2022-06-29)
ZA [auth s]SCOP2 FamilyChlorophyll a-b binding protein8100485 4001763 SCOP2 (2022-06-29)
ZA [auth s]SCOP2 SuperfamilyChlorophyll a-b binding protein8100486 3000343 SCOP2 (2022-06-29)
YSCOP2 FamilyChlorophyll a-b binding protein8094538 4001763 SCOP2 (2022-06-29)
YSCOP2 SuperfamilyChlorophyll a-b binding protein8094539 3000343 SCOP2 (2022-06-29)
AB [auth y]SCOP2B SuperfamilyChlorophyll a-b binding protein8094539 3000343 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00124e6kacA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
CA [auth a]PF00124e6kaca1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
DA [auth b]PF00421e6kacb1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
DA [auth b]PF00421e6kacb2 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PF00421ECOD (1.6)
BPF00421e6kacB2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
BPF00421e6kacB1 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PF00421ECOD (1.6)
C [auth V]PF05969e6kacV1 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PF05969ECOD (1.6)
EA [auth v]PF05969e6kacv1 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PF05969ECOD (1.6)
D [auth C]PF00421e6kacC1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
FA [auth c]PF00421e6kacc1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
E [auth D]PF00124e6kacD1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
GA [auth d]PF00124e6kacd1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
F [auth E]PF00283,PF00284e6kacE1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283,PF00284ECOD (1.6)
HA [auth e]PF00283,PF00284e6kace1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283,PF00284ECOD (1.6)
IA [auth f]PF00283e6kacf1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283ECOD (1.6)
G [auth F]PF00283e6kacF1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283ECOD (1.6)
JA [auth h]PF00737e6kach1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PF00737ECOD (1.6)
HPF00737e6kacH1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PF00737ECOD (1.6)
IPF02532e6kacI1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PF02532ECOD (1.6)
KA [auth i]PF02532e6kaci1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PF02532ECOD (1.6)
JPF01788e6kacJ1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PF01788ECOD (1.6)
LA [auth j]PF01788e6kacj1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PF01788ECOD (1.6)
MA [auth k]PF02533e6kack1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PF02533ECOD (1.6)
KPF02533e6kacK1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PF02533ECOD (1.6)
LPF02419e6kacL1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PF02419ECOD (1.6)
NA [auth l]PF02419e6kacl1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PF02419ECOD (1.6)
MPF05151e6kacM1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PF05151ECOD (1.6)
OA [auth m]PF05151e6kacm1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PF05151ECOD (1.6)
N [auth O]PF01716e6kacO1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: PF01716ECOD (1.6)
PA [auth o]PF01716e6kaco1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: PF01716ECOD (1.6)
O [auth P]PF01789e6kacP1 A: a+b three layersX: Mog1p/PsbP-likeH: Mog1p/PsbP-like (From Topology)T: Mog1p/PsbP-likeF: PF01789ECOD (1.6)
QA [auth p]PF01789e6kacp1 A: a+b three layersX: Mog1p/PsbP-likeH: Mog1p/PsbP-like (From Topology)T: Mog1p/PsbP-likeF: PF01789ECOD (1.6)
P [auth Q]PF05757e6kacQ1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PF05757ECOD (1.6)
RA [auth q]PF05757e6kacq1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PF05757ECOD (1.6)
Q [auth T]PF01405e6kacT1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PF01405ECOD (1.6)
SA [auth t]PF01405e6kact1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PF01405ECOD (1.6)
R [auth W]PF07123e6kacW1 A: extended segmentsX: Photosystem II reaction center W protein, chloroplastic (From Topology)H: Photosystem II reaction center W protein, chloroplastic (From Topology)T: Photosystem II reaction center W protein, chloroplasticF: PF07123ECOD (1.6)
TA [auth w]PF07123e6kacw1 A: extended segmentsX: Photosystem II reaction center W protein, chloroplastic (From Topology)H: Photosystem II reaction center W protein, chloroplastic (From Topology)T: Photosystem II reaction center W protein, chloroplasticF: PF07123ECOD (1.6)
S [auth X]PF06596e6kacX1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PF06596ECOD (1.6)
UA [auth x]PF06596e6kacx1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PF06596ECOD (1.6)
T [auth Z]PF01737e6kacZ1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: PF01737ECOD (1.6)
VA [auth z]PF01737e6kacz1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: PF01737ECOD (1.6)
WA [auth n]PF00504e6kacn1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
U [auth N]PF00504e6kacN1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
V [auth G]PF00504e6kacG1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
XA [auth g]PF00504e6kacg1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
W [auth R]PF00504e6kacR1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
YA [auth r]PF00504e6kacr1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
X [auth S]PF00504e6kacS1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
ZA [auth s]PF00504e6kacs1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
YPF00504e6kacY1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
AB [auth y]PF00504e6kacy1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
DA [auth b]3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (utative)
B3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (utative)
D [auth C]1.10.10.670 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A photosystem ii from thermosynechococcus elongatusCATH (utative)
FA [auth c]1.10.10.670 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A photosystem ii from thermosynechococcus elongatusCATH (utative)
F [auth E]1.20.5.860 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II cytochrome b559, alpha subunitCATH (utative)
HA [auth e]1.20.5.860 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II cytochrome b559, alpha subunitCATH (utative)
JA [auth h]1.20.5.880 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II reaction center protein HCATH (utative)
H1.20.5.880 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II reaction center protein HCATH (utative)
O [auth P]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (utative)
QA [auth p]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (utative)
T [auth Z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (utative)
VA [auth z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
CA [auth a]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
B,
DA [auth b]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
C [auth V],
EA [auth v]
PF05969Photosystem II complex subunit Ycf12 (PSII_Ycf12)Photosystem II complex subunit Ycf12- Family
D [auth C],
FA [auth c]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
E [auth D],
GA [auth d]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
F [auth E],
HA [auth e]
PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
F [auth E],
HA [auth e]
PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
G [auth F],
IA [auth f]
PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
H,
JA [auth h]
PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
I,
KA [auth i]
PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
J,
LA [auth j]
PF01788PsbJ (PsbJ)PsbJ- Family
K,
MA [auth k]
PF02533Photosystem II 4 kDa reaction centre component (PsbK)Photosystem II 4 kDa reaction centre component- Family
L,
NA [auth l]
PF02419PsbL protein (PsbL)PsbL protein- Family
M,
OA [auth m]
PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
N [auth O],
PA [auth o]
PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
O [auth P],
QA [auth p]
PF01789PsbP (PsbP)PsbPThis entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be ful ...This entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+ [2]. Structure of CyanoP from Synechocystis sp. revealed that it has an alpha-beta-alpha fold containing 10 beta strands organized into two anti-parallel beta-sheets, packed against alpha-helices. This entry covers the first seven beta-stands (beta1-beta7) and the N-terminal alpha-helix [1].
Domain
O [auth P],
QA [auth p]
PF20928PsbP, C-terminal (PsbP_C)PsbP, C-terminalThis entry represents the C-terminal of PsbP/CyanoP and PsbP-like proteins (also known as 23 kDa subunit of oxygen evolving system of photosystem II) from plants and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational ...This entry represents the C-terminal of PsbP/CyanoP and PsbP-like proteins (also known as 23 kDa subunit of oxygen evolving system of photosystem II) from plants and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+ [2]. Structure of CyanoP from Synechocystis sp. revealed that it has an alpha-beta-alpha fold containing 10 beta strands organized into two anti-parallel beta-sheets, packed against two alpha-helices. This entry covers the last three beta-stands (beta8-beta9-beta10) and the C-terminal alpha-helix [1,2].
Domain
P [auth Q],
RA [auth q]
PF05757Oxygen evolving enhancer protein 3 (PsbQ) (PsbQ)Oxygen evolving enhancer protein 3 (PsbQ)- Family
Q [auth T],
SA [auth t]
PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
R [auth W],
TA [auth w]
PF07123Photosystem II reaction centre W protein (PsbW) (PsbW)Photosystem II reaction centre W protein (PsbW)- Family
S [auth X],
UA [auth x]
PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
T [auth Z],
VA [auth z]
PF01737YCF9 (Ycf9)YCF9- Family
U [auth N],
WA [auth n]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
V [auth G],
XA [auth g]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
W [auth R],
YA [auth r]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
X [auth S],
ZA [auth s]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
AB [auth y],
Y
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
BB [auth u],
Z [auth U]
PF13326Photosystem II Pbs27 (PSII_Pbs27)Photosystem II Pbs27- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
CA [auth a]
Photosystem II protein D1
B,
DA [auth b]
Photosystem II CP47 reaction center protein
C [auth V],
EA [auth v]
Photosystem II reaction center protein Ycf12-
D [auth C],
FA [auth c]
Photosystem II CP43 reaction center protein
E [auth D],
GA [auth d]
Photosystem II D2 protein
F [auth E],
HA [auth e]
Cytochrome b559 subunit alpha
G [auth F],
IA [auth f]
Cytochrome b559 subunit beta
H,
JA [auth h]
Photosystem II reaction center protein H
I,
KA [auth i]
Photosystem II reaction center protein I-
J,
LA [auth j]
Photosystem II reaction center protein J-
K,
MA [auth k]
Photosystem II reaction center protein K-
L,
NA [auth l]
Photosystem II reaction center protein L-
M,
OA [auth m]
Photosystem II reaction center protein M-
N [auth O],
PA [auth o]
Oxygen-evolving enhancer protein 1, chloroplastic
O [auth P],
QA [auth p]
Oxygen-evolving enhancer protein 2, chloroplastic
P [auth Q],
RA [auth q]
Oxygen-evolving enhancer protein 3, chloroplastic
Q [auth T],
SA [auth t]
Photosystem II reaction center protein T-
R [auth W],
TA [auth w]
Photosystem II reaction center W protein, chloroplastic-
S [auth X],
UA [auth x]
4.1 kDa photosystem II subunit-
T [auth Z],
VA [auth z]
Photosystem II reaction center protein Z-
U [auth N],
WA [auth n]
Chlorophyll a-b binding protein, chloroplastic
V [auth G],
XA [auth g]
Chlorophyll a-b binding protein, chloroplastic
W [auth R],
YA [auth r]
Chlorophyll a-b binding protein CP29
X [auth S],
ZA [auth s]
Chlorophyll a-b binding protein, chloroplastic
AB [auth y],
Y
Chlorophyll a-b binding protein, chloroplastic
BB [auth u],
Z [auth U]
Predicted protein-
AA [auth 1],
CB [auth 0]
10 kDa photosystem II polypeptide PsbR (potential)---
BA [auth 4],
DB [auth 3]
Unindentified Stromal Protein (USP)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
CA [auth a]
IPR005867Photosystem II protein D1Family
A,
CA [auth a]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
CA [auth a]
IPR000484Photosynthetic reaction centre, L/MFamily
B,
DA [auth b]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
DA [auth b]
IPR000932Photosystem antenna protein-likeFamily
B,
DA [auth b]
IPR017486Photosystem II CP47 reaction centre proteinFamily
C [auth V],
EA [auth v]
IPR010284Photosystem II reaction center protein Ycf12Family
D [auth C],
FA [auth c]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
D [auth C],
FA [auth c]
IPR000932Photosystem antenna protein-likeFamily
D [auth C],
FA [auth c]
IPR005869Photosystem II CP43 reaction centre proteinFamily
D [auth C],
FA [auth c]
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
E [auth D],
GA [auth d]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
E [auth D],
GA [auth d]
IPR000484Photosynthetic reaction centre, L/MFamily
E [auth D],
GA [auth d]
IPR005868Photosystem II D2 proteinFamily
F [auth E],
HA [auth e]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
F [auth E],
HA [auth e]
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
F [auth E],
HA [auth e]
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
F [auth E],
HA [auth e]
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
F [auth E],
HA [auth e]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
G [auth F],
IA [auth f]
IPR006241Photosystem II cytochrome b559, beta subunitFamily
G [auth F],
IA [auth f]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
G [auth F],
IA [auth f]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
H,
JA [auth h]
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
H,
JA [auth h]
IPR001056Photosystem II reaction centre protein HFamily
I,
KA [auth i]
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
I,
KA [auth i]
IPR003686Photosystem II PsbIFamily
J,
LA [auth j]
IPR002682Photosystem II PsbJFamily
J,
LA [auth j]
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
K,
MA [auth k]
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
K,
MA [auth k]
IPR003687Photosystem II PsbKFamily
L,
NA [auth l]
IPR003372Photosystem II PsbLFamily
L,
NA [auth l]
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
M,
OA [auth m]
IPR007826Photosystem II PsbMFamily
M,
OA [auth m]
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
N [auth O],
PA [auth o]
IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
N [auth O],
PA [auth o]
IPR002628Photosystem II extrinsic protein OFamily
O [auth P],
QA [auth p]
IPR002683PsbP, C-terminalDomain
O [auth P],
QA [auth p]
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
P [auth Q],
RA [auth q]
IPR008797Oxygen-evolving enhancer protein 3Family
P [auth Q],
RA [auth q]
IPR023222PsbQ-like domain superfamilyHomologous Superfamily
Q [auth T],
SA [auth t]
IPR001743Photosystem II PsbTFamily
Q [auth T],
SA [auth t]
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
R [auth W],
TA [auth w]
IPR009806Photosystem II PsbW, class 2Family
S [auth X],
UA [auth x]
IPR009518Photosystem II PsbXFamily
T [auth Z],
VA [auth z]
IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
T [auth Z],
VA [auth z]
IPR002644Photosystem II PsbZ, reaction centreFamily
U [auth N],
WA [auth n]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
U [auth N],
WA [auth n]
IPR022796Chlorophyll A-B binding proteinFamily
V [auth G],
XA [auth g]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
V [auth G],
XA [auth g]
IPR022796Chlorophyll A-B binding proteinFamily
W [auth R],
YA [auth r]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
W [auth R],
YA [auth r]
IPR022796Chlorophyll A-B binding proteinFamily
X [auth S],
ZA [auth s]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
X [auth S],
ZA [auth s]
IPR022796Chlorophyll A-B binding proteinFamily
AB [auth y],
Y
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
AB [auth y],
Y
IPR022796Chlorophyll A-B binding proteinFamily
BB [auth u],
Z [auth U]
IPR025585Photosystem II Psb27Family
BB [auth u],
Z [auth U]
IPR038450Photosystem II Psb27 superfamilyHomologous Superfamily