GII.13/21 noroviruses recognize glycans with a terminal beta-galactose via an unconventional glycan binding site
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d6jyna_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Alphatron virus ) [TaxId: 2755033 ], | SCOPe (2.08) |
| B | d6jynb_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Alphatron virus ) [TaxId: 2755033 ], | SCOPe (2.08) |
| C | d6jync_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Alphatron virus ) [TaxId: 2755033 ], | SCOPe (2.08) |
| D | d6jynd_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Alphatron virus ) [TaxId: 2755033 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | tRNA-synt_1e | e6jynA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: beta-helix of amnionless (AMN) extracellular domain | T: beta-helix of amnionless (AMN) extracellular domain | F: tRNA-synt_1e | ECOD (v294.1) |
| B | HH_signal | e6jynB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: beta-helix of amnionless (AMN) extracellular domain | T: beta-helix of amnionless (AMN) extracellular domain | F: HH_signal | ECOD (v294.1) |
| C | HH_signal | e6jynC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: beta-helix of amnionless (AMN) extracellular domain | T: beta-helix of amnionless (AMN) extracellular domain | F: HH_signal | ECOD (v294.1) |
| D | HH_signal | e6jynD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: beta-helix of amnionless (AMN) extracellular domain | T: beta-helix of amnionless (AMN) extracellular domain | F: HH_signal | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (utative) |
| A | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (utative) |
| B | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (utative) |
| B | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (utative) |
| C | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (utative) |
| C | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (utative) |
| D | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (utative) |
| D | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (utative) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| human norovirus P domain protein | - | - |
