6JLD | pdb_00006jld

Crystal structure of a human ependymin related protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	ATP-synt	e6jldD1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ATP-synt	ECOD (v294.1)
C	ATP-synt	e6jldC1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ATP-synt	ECOD (v294.1)
B	ATP-synt	e6jldB1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ATP-synt	ECOD (v294.1)
A	ATP-synt	e6jldA1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ATP-synt	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00811	Ependymin (Ependymin)	Ependymin		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Mammalian ependymin-related protein 1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phospholipid binding lipid binding ganglioside GM1 binding organic acid binding ceramide binding sphingolipid binding glycolipid binding glycosphingolipid binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phospholipid binding lipid binding ganglioside GM1 binding organic acid binding ceramide binding sphingolipid binding glycolipid binding glycosphingolipid binding ganglioside binding anion binding carboxylic acid binding carbohydrate derivative binding identical protein binding protein binding	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process actin filament-based process myofibroblast contraction actin-mediated cell contraction actin filament-based movement	cellular anatomical structure extracellular region membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen lytic vacuole vacuolar lumen vacuole intracellular membrane-bounded organelle lysosomal lumen intracellular organelle lumen intracellular organelle organelle lumen organelle cellular anatomical structure extracellular region membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen lytic vacuole vacuolar lumen vacuole intracellular membrane-bounded organelle lysosomal lumen intracellular organelle lumen intracellular organelle organelle lumen organelle cytoplasm lysosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001299	Ependymin	Family
A, B, C, D	IPR018224	Ependymin, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q9UM22	angle-closure glaucoma Pick disease primary angle-closure glaucoma breast cancer cystic fibrosis head and neck cancer large cell medulloblastoma medulloblastoma ovarian cancer pituitary cancer primitive neuroectodermal tumor astrocytic tumor breast carcinoma ductal breast carcinoma in situ herpes zoster angle-closure glaucoma Pick disease primary angle-closure glaucoma breast cancer cystic fibrosis head and neck cancer large cell medulloblastoma medulloblastoma ovarian cancer pituitary cancer primitive neuroectodermal tumor astrocytic tumor breast carcinoma ductal breast carcinoma in situ herpes zoster malignant ependymoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma plantar fibromatosis psoriasis atypical teratoid rhabdoid tumor breast fibroadenoma gastric carcinoma invasive ductal breast carcinoma malignant pancreatic neoplasm oligodendroglioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.