6JDV | pdb_00006jdv

Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in catalytic state


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACas9_RECe6jdvA1 A: alpha complex topologyX: CRISPR-associated endonuclease Cas9 alpha-helical lobeH: CRISPR-associated endonuclease Cas9 alpha-helical lobe (From Topology)T: CRISPR-associated endonuclease Cas9 alpha-helical lobeF: Cas9_RECECOD (1.6)
ACas9_2nde6jdvA6 A: a+b two layersX: SSHS domainH: SSHS domain in CRISPR-associated endonuclease Cas9 (From Topology)T: SSHS domain in CRISPR-associated endonuclease Cas9F: Cas9_2ndECOD (1.6)
AUNK_F_TYPEe6jdvA5 A: a+b complex topologyX: CRISPR-associated endonuclease Cas9 C-terminal domain (From Topology)H: CRISPR-associated endonuclease Cas9 C-terminal domain (From Topology)T: CRISPR-associated endonuclease Cas9 C-terminal domainF: UNK_F_TYPEECOD (1.6)
AUvrD_Ce6jdvA4 A: a+b complex topologyX: CRISPR-associated endonuclease Cas9 wedge domain (From Topology)H: CRISPR-associated endonuclease Cas9 wedge domain (From Topology)T: CRISPR-associated endonuclease Cas9 wedge domainF: UvrD_CECOD (1.6)
ACas9_1ste6jdvA2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Cas9_1stECOD (1.6)
AHNH_4e6jdvA3 A: few secondary structure elementsX: His-Me finger endonucleases (From Homology)H: His-Me finger endonucleasesT: His-Me finger endonucleasesF: HNH_4ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage