Cryo-EM structure of the mammalian DP-state ATP synthase
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| J [auth I] | SCOP2 Family | epsilon subunit of mitochondrial f1f0-atp synthase | 8094376 | 4001544 | SCOP2 (2022-06-29) |
| J [auth I] | SCOP2 Superfamily | epsilon subunit of mitochondrial F1F0-ATP synthase | 8094377 | 3001799 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | TetR_N | e6j5iA1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| B | TetR_N | e6j5iB1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| C | TetR_N | e6j5iC1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| D | TetR_N | e6j5iD1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| E | TetR_N | e6j5iE1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| F | TetR_N | e6j5iF1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| H [auth G] | TetR_N | e6j5iG1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| I [auth H] | TetR_N | e6j5iH1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| J [auth I] | TetR_N | e6j5iI1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| L [auth b] | TetR_N | e6j5ib1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| N [auth d] | TetR_N | e6j5id1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| U [auth a] | 7tm_1 | e6j5ia1 | A: alpha bundles | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: 7tm_1 | ECOD (develop294) |
| AA [auth P] | TetR_N | e6j5iP1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| BA [auth Q] | TetR_N | e6j5iQ1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| CA [auth R] | TetR_N | e6j5iR1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| V [auth K] | TetR_N | e6j5iK1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| W [auth L] | TetR_N | e6j5iL1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| X [auth M] | TetR_N | e6j5iM1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| Z [auth O] | TetR_N | e6j5iO1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| Y [auth N] | TetR_N | e6j5iN1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
| M [auth c] | TetR_N | e6j5ic1 | A: alpha bundles | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF00306 | ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C) | ATP synthase alpha/beta chain, C terminal domain | Domain | ||
| PF00119 | ATP synthase A chain (ATP-synt_A) | ATP synthase A chain | Domain | ||
| PF05511 | Mitochondrial ATP synthase coupling factor 6 (ATP-synt_F6) | Mitochondrial ATP synthase coupling factor 6 | - | Family | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
| PF05405 | Mitochondrial ATP synthase B chain precursor (ATP-synt_B) (Mt_ATP-synt_B) | Mitochondrial ATP synthase B chain precursor (ATP-synt_B) | - | Family | |
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
| PF05873 | ATP synthase D chain, mitochondrial (ATP5H) (Mt_ATP-synt_D) | ATP synthase D chain, mitochondrial (ATP5H) | - | Family | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
| PF10206 | Mitochondrial F1F0-ATP synthase, subunit f (WRW) | Mitochondrial F1F0-ATP synthase, subunit f | - | Family | |
| G [auth J] | PF04568 | Mitochondrial ATPase inhibitor, IATP (IATP) | Mitochondrial ATPase inhibitor, IATP | - | Family |
| I [auth H] | PF02823 | ATP synthase, Delta/Epsilon chain, beta-sandwich domain (ATP-synt_DE_N) | ATP synthase, Delta/Epsilon chain, beta-sandwich domain | Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensit ... | Domain |
| I [auth H] | PF21335 | Metazoan delta subunit of F1F0-ATP synthase, C-terminal domain (ATPD_C_metazoa) | Metazoan delta subunit of F1F0-ATP synthase, C-terminal domain | F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core, and F0 which contains the membrane proton channel. This entry includes ATP synthase subunit delta from animals (called epsilon in bacteria or chlorop ... | Domain |
| J [auth I] | PF14960 | ATP synthase regulation (ATP_synth_reg) | ATP synthase regulation | - | Family |
| K [auth S] | PF00213 | ATP synthase delta (OSCP) subunit (OSCP) | ATP synthase delta (OSCP) subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Proton or Sodium translocating F-type, V-type and A-type ATPases | V-type and F-type ATPases |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | F-type ATPase | F1Fo synthase in E-state |














