6IMM | pdb_00006imm

Cryo-EM structure of an alphavirus, Sindbis virus

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth i]Alpha_E3_glycope6immi1 A: a+b two layersX: Glycoprotein E3 (From Topology)H: Glycoprotein E3 (From Topology)T: Glycoprotein E3F: Alpha_E3_glycopECOD (1.6)
K [auth h]Alpha_E3_glycope6immh1 A: a+b two layersX: Glycoprotein E3 (From Topology)H: Glycoprotein E3 (From Topology)T: Glycoprotein E3F: Alpha_E3_glycopECOD (1.6)
F [auth X]Alpha_E3_glycope6immX1 A: a+b two layersX: Glycoprotein E3 (From Topology)H: Glycoprotein E3 (From Topology)T: Glycoprotein E3F: Alpha_E3_glycopECOD (1.6)
C [auth R]Alpha_E3_glycope6immR1 A: a+b two layersX: Glycoprotein E3 (From Topology)H: Glycoprotein E3 (From Topology)T: Glycoprotein E3F: Alpha_E3_glycopECOD (1.6)
H [auth a]Alpha_E1_glycop_2nde6imma1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
H [auth a]Alpha_E1_glycop_1ste6imma2 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
H [auth a]Alpha_E1_glycop_likee6imma3 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
G [auth Z]Alpha_E1_glycop_2nde6immZ3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
G [auth Z]Alpha_E1_glycop_1ste6immZ1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
G [auth Z]Alpha_E1_glycop_likee6immZ2 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
D [auth T]Alpha_E1_glycop_2nde6immT2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
D [auth T]Alpha_E1_glycop_1ste6immT1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
D [auth T]Alpha_E1_glycop_likee6immT3 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
A [auth N]Alpha_E1_glycop_2nde6immN1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
A [auth N]Alpha_E1_glycop_1ste6immN3 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
A [auth N]Alpha_E1_glycop_likee6immN2 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
L [auth i]1.10.287.2230 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
K [auth h]1.10.287.2230 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
F [auth X]1.10.287.2230 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
C [auth R]1.10.287.2230 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
J [auth e]2.60.40.3200 Mainly Beta Sandwich Immunoglobulin-like Alphavirus E2 glycoprotein, A domainCATH (utative)
J [auth e]2.60.40.2400 Mainly Beta Sandwich Immunoglobulin-like Alphavirus E2 glycoprotein, domain CCATH (utative)
I [auth d]2.60.40.3200 Mainly Beta Sandwich Immunoglobulin-like Alphavirus E2 glycoprotein, A domainCATH (utative)
I [auth d]2.60.40.2400 Mainly Beta Sandwich Immunoglobulin-like Alphavirus E2 glycoprotein, domain CCATH (utative)
E [auth V]2.60.40.3200 Mainly Beta Sandwich Immunoglobulin-like Alphavirus E2 glycoprotein, A domainCATH (utative)
E [auth V]2.60.40.2400 Mainly Beta Sandwich Immunoglobulin-like Alphavirus E2 glycoprotein, domain CCATH (utative)
B [auth P]2.60.40.3200 Mainly Beta Sandwich Immunoglobulin-like Alphavirus E2 glycoprotein, A domainCATH (utative)
B [auth P]2.60.40.2400 Mainly Beta Sandwich Immunoglobulin-like Alphavirus E2 glycoprotein, domain CCATH (utative)
H [auth a]2.60.40.350 Mainly Beta Sandwich Immunoglobulin-like CATH (utative)
D [auth T]2.60.40.350 Mainly Beta Sandwich Immunoglobulin-like CATH (utative)
A [auth N]2.60.40.350 Mainly Beta Sandwich Immunoglobulin-like CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth R],
F [auth X],
K [auth h],
L [auth i]		Assembly protein E3
B [auth P],
E [auth V],
I [auth d],
J [auth e]		Spike glycoprotein E2
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		Spike glycoprotein E1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth R],
F [auth X],
K [auth h],
L [auth i]		IPR002533Alphavirus E3 spike glycoproteinDomain
C [auth R],
F [auth X],
K [auth h],
L [auth i]		IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth R],
F [auth X],
K [auth h],
L [auth i]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
C [auth R],
F [auth X],
K [auth h],
L [auth i]		IPR000936Alphavirus E2 glycoproteinFamily
C [auth R],
F [auth X],
K [auth h],
L [auth i]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
C [auth R],
F [auth X],
K [auth h],
L [auth i]		IPR000930Peptidase S3, togavirinDomain
C [auth R],
F [auth X],
K [auth h],
L [auth i]		IPR014756Immunoglobulin E-setHomologous Superfamily
C [auth R],
F [auth X],
K [auth h],
L [auth i]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
C [auth R],
F [auth X],
K [auth h],
L [auth i]		IPR002548Alphavirus E1 glycoproteinDomain
C [auth R],
F [auth X],
K [auth h],
L [auth i]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
C [auth R],
F [auth X],
K [auth h],
L [auth i]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
C [auth R],
F [auth X],
K [auth h],
L [auth i]		IPR043504Peptidase_S1_PA_chymotrypsinUnknown
B [auth P],
E [auth V],
I [auth d],
J [auth e]		IPR002533Alphavirus E3 spike glycoproteinDomain
B [auth P],
E [auth V],
I [auth d],
J [auth e]		IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth P],
E [auth V],
I [auth d],
J [auth e]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
B [auth P],
E [auth V],
I [auth d],
J [auth e]		IPR000936Alphavirus E2 glycoproteinFamily
B [auth P],
E [auth V],
I [auth d],
J [auth e]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
B [auth P],
E [auth V],
I [auth d],
J [auth e]		IPR000930Peptidase S3, togavirinDomain
B [auth P],
E [auth V],
I [auth d],
J [auth e]		IPR014756Immunoglobulin E-setHomologous Superfamily
B [auth P],
E [auth V],
I [auth d],
J [auth e]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
B [auth P],
E [auth V],
I [auth d],
J [auth e]		IPR002548Alphavirus E1 glycoproteinDomain
B [auth P],
E [auth V],
I [auth d],
J [auth e]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
B [auth P],
E [auth V],
I [auth d],
J [auth e]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
B [auth P],
E [auth V],
I [auth d],
J [auth e]		IPR043504Peptidase_S1_PA_chymotrypsinUnknown
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		IPR002533Alphavirus E3 spike glycoproteinDomain
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		IPR000936Alphavirus E2 glycoproteinFamily
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		IPR000930Peptidase S3, togavirinDomain
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		IPR014756Immunoglobulin E-setHomologous Superfamily
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		IPR002548Alphavirus E1 glycoproteinDomain
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
A [auth N],
D [auth T],
G [auth Z],
H [auth a]		IPR043504Peptidase_S1_PA_chymotrypsinUnknown