6IHJ | pdb_00006ihj

Crystal structure of Drosophila Nxf1 NTF2 domain in complex with Nxt1/p15

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d6ihjd_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ],	SCOPe (2.08)
C [auth B]	d6ihjb_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	NTF2-like	8095783	3000472	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	NTF2-like	8095783	3000472	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	NTF2-like	8100672	3000472	SCOP2B (2022-06-29)
A	SCOP2 Family	NTF2-like	8100671	4001021	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	NTF2-like	8100672	3000472	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	ubiquitin	e6ihjD1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
C [auth B]	Oxidored_nitro,DUF3364	e6ihjB1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Oxidored_nitro,DUF3364	ECOD (v294.1)
B [auth C]	ubiquitin	e6ihjC1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
A	Oxidored_nitro,DUF3364	e6ihjA1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Oxidored_nitro,DUF3364	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (utative)
C [auth B]	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (utative)
B [auth C]	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (utative)
A	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth B], D	PF02136	Nuclear transport factor 2 (NTF2) domain (NTF2)	Nuclear transport factor 2 (NTF2) domain	This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins.	Domain
A, B [auth C]	PF22602	Nuclear RNA export factor, NTF2 domain (NXF_NTF2)	Nuclear RNA export factor, NTF2 domain	This entry represents the NTF2 domain of nuclear RNA export factors (NFX), proteins that are involved in the nuclear export of mRNAs [1-5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth B], D	NTF2-related export protein	-	cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization intercellular transport mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization intercellular transport mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport nucleic acid transport poly(A)+ mRNA export from nucleus intracellular transport gene expression establishment of localization macromolecule biosynthetic process RNA export from nucleus establishment of RNA localization biosynthetic process macromolecule localization cellular process metabolic process macromolecule metabolic process establishment of protein localization protein transport intracellular protein localization biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to external stimulus defense response to Gram-negative bacterium response to biotic stimulus defense response to bacterium response to bacterium response to stress response to external biotic stimulus regulation of defense response regulation of response to biotic stimulus negative regulation of response to biotic stimulus regulation of response to external stimulus negative regulation of biological process regulation of response to stress innate immune response regulation of immune system process regulation of biological process negative regulation of response to stimulus immune response regulation of innate immune response negative regulation of immune response biological regulation defense response to symbiont regulation of response to stimulus negative regulation of immune system process immune system process defense response to other organism negative regulation of response to external stimulus negative regulation of defense response regulation of immune response negative regulation of innate immune response regulation of cellular process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process retrotransposition regulation of biosynthetic process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process transposable element silencing by piRNA-mediated heterochromatin formation transposable element silencing by heterochromatin formation heterochromatin organization regulation of macromolecule metabolic process transposition regulatory ncRNA-mediated gene silencing regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation regulatory ncRNA-mediated heterochromatin formation negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process transposable element silencing piRNA-mediated heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process regulation of metabolic process	membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system RNA polymerase II transcription repressor complex protein-containing complex nuclear protein-containing complex transcription regulator complex membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system RNA polymerase II transcription repressor complex protein-containing complex nuclear protein-containing complex transcription regulator complex transcription repressor complex nuclear pore nuclear pore central transport channel cytoplasm membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
A, B [auth C]	Nuclear RNA export factor 1	ribonucleoprotein complex binding protein-containing complex binding binding RNA binding nucleic acid binding	cellular localization nucleocytoplasmic transport transport nuclear transport intracellular transport establishment of localization localization intercellular transport establishment of localization in cell cellular process nuclear export nitrogen compound transport mRNA transport mRNA export from nucleus cellular localization nucleocytoplasmic transport transport nuclear transport intracellular transport establishment of localization localization intercellular transport establishment of localization in cell cellular process nuclear export nitrogen compound transport mRNA transport mRNA export from nucleus RNA localization nucleobase-containing compound transport RNA transport nucleic acid transport poly(A)+ mRNA export from nucleus gene expression macromolecule biosynthetic process RNA export from nucleus establishment of RNA localization biosynthetic process macromolecule localization metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane cytoplasm membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane cytoplasm membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth B], D	IPR032710	NTF2-like domain superfamily	Homologous Superfamily
C [auth B], D	IPR045875	Nuclear transport factor 2	Family
C [auth B], D	IPR018222	Nuclear transport factor 2, eukaryote	Domain
C [auth B], D	IPR002075	Nuclear transport factor 2 domain	Domain
A, B [auth C]	IPR030217	Nuclear RNA export factor	Family
A, B [auth C]	IPR032710	NTF2-like domain superfamily	Homologous Superfamily
A, B [auth C]	IPR015245	Nuclear RNA export factor Tap, RNA-binding domain	Domain
A, B [auth C]	IPR001611	Leucine-rich repeat	Repeat
A, B [auth C]	IPR018222	Nuclear transport factor 2, eukaryote	Domain
A, B [auth C]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A, B [auth C]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, B [auth C]	IPR057125	NXF1/2/3/5-like, leucine-rich repeat domain	Domain
A, B [auth C]	IPR009060	UBA-like superfamily	Homologous Superfamily
A, B [auth C]	IPR005637	TAP C-terminal (TAP-C) domain	Domain
A, B [auth C]	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
A, B [auth C]	IPR002075	Nuclear transport factor 2 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.