6I20 | pdb_00006i20

Flavin Analogue Sheds Light on Light-Oxygen-Voltage Domain Mechanism

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6i20b1	Alpha and beta proteins (a+b)	Profilin-like	PYP-like sensor domain (PAS domain)	automated matches	automated matches	(Ochromonas danica ) [TaxId: 2986 ],	SCOPe (2.08)
B	d6i20b3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Ochromonas danica ) [TaxId: 2986 ],	SCOPe (2.08)
B	d6i20b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Ochromonas danica ) [TaxId: 2986 ],	SCOPe (2.08)
D	d6i20d1	Alpha and beta proteins (a+b)	Profilin-like	PYP-like sensor domain (PAS domain)	automated matches	automated matches	(Ochromonas danica ) [TaxId: 2986 ],	SCOPe (2.08)
D	d6i20d3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Ochromonas danica ) [TaxId: 2986 ],	SCOPe (2.08)
D	d6i20d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Ochromonas danica ) [TaxId: 2986 ],	SCOPe (2.08)
C	d6i20c1	Alpha and beta proteins (a+b)	Profilin-like	PYP-like sensor domain (PAS domain)	automated matches	automated matches	(Ochromonas danica ) [TaxId: 2986 ],	SCOPe (2.08)
C	d6i20c3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Ochromonas danica ) [TaxId: 2986 ],	SCOPe (2.08)
C	d6i20c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Ochromonas danica ) [TaxId: 2986 ],	SCOPe (2.08)
A	d6i20a1	Alpha and beta proteins (a+b)	Profilin-like	PYP-like sensor domain (PAS domain)	automated matches	automated matches	(Ochromonas danica ) [TaxId: 2986 ],	SCOPe (2.08)
A	d6i20a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Ochromonas danica ) [TaxId: 2986 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	PYP-like sensor domain (PAS domain)	8097434	3000471	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PYP-like sensor domain (PAS domain)	8097434	3000471	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PYP-like sensor domain (PAS domain)	8097434	3000471	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PYP-like sensor domain (PAS domain)	8097434	3000471	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	NUDIX	e6i20B1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: a+b domain in acetyl-CoA synthetase-like proteins	T: a+b domain in acetyl-CoA synthetase-like proteins	F: NUDIX	ECOD (v294.1)
D	NUDIX	e6i20D1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: a+b domain in acetyl-CoA synthetase-like proteins	T: a+b domain in acetyl-CoA synthetase-like proteins	F: NUDIX	ECOD (v294.1)
C	NUDIX	e6i20C1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: a+b domain in acetyl-CoA synthetase-like proteins	T: a+b domain in acetyl-CoA synthetase-like proteins	F: NUDIX	ECOD (v294.1)
A	NUDIX	e6i20A1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: a+b domain in acetyl-CoA synthetase-like proteins	T: a+b domain in acetyl-CoA synthetase-like proteins	F: NUDIX	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (utative)
D	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (utative)
C	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (utative)
A	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Aureochrome1-like protein	transcription regulator activity DNA-binding transcription factor activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding cation binding ion binding metal ion binding	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
A, C, D	Aureochrome1-like protein	transcription regulator activity DNA-binding transcription factor activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding cation binding ion binding metal ion binding	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR035965	PAS domain superfamily	Homologous Superfamily
B	IPR001610	PAC motif	Repeat
B	IPR000700	PAS-associated, C-terminal	Domain
B	IPR046347	Basic-leucine zipper domain superfamily	Homologous Superfamily
B	IPR000014	PAS domain	Domain
B	IPR004827	Basic-leucine zipper domain	Domain
A, C, D	IPR035965	PAS domain superfamily	Homologous Superfamily
A, C, D	IPR001610	PAC motif	Repeat
A, C, D	IPR000700	PAS-associated, C-terminal	Domain
A, C, D	IPR046347	Basic-leucine zipper domain superfamily	Homologous Superfamily
A, C, D	IPR000014	PAS domain	Domain
A, C, D	IPR004827	Basic-leucine zipper domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.