6HIY

Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P [auth CF]	F_UNCLASSIFIED	e6hiyCF1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S6 (From Topology)	T: Ribosomal protein S6	F: F_UNCLASSIFIED	ECOD (1.6)
Z [auth CZ]	F_UNCLASSIFIED	e6hiyCZ1	A: a+b two layers	X: IF3-like	H: Translation initiation factor IF3, C-terminal domain (From Topology)	T: Translation initiation factor IF3, C-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
K [auth DS]	PF14311	Probable Zinc-ribbon domain (DUF4379)	Probable Zinc-ribbon domain	-	Family
L [auth DU]	PF00240	Ubiquitin family (ubiquitin)	Ubiquitin family	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].	Domain
O [auth CE]	PF03719	Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)	Ribosomal protein S5, C-terminal domain	-	Domain
Q [auth CH]	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8	-	Domain
W [auth CQ]	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17	-	Domain
HA [auth Cq]	PF02777	Iron/manganese superoxide dismutases, C-terminal domain (Sod_Fe_C)	Iron/manganese superoxide dismutases, C-terminal domain	superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplas ...	superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.	Domain
IA [auth Cr]	PF02777	Iron/manganese superoxide dismutases, C-terminal domain (Sod_Fe_C)	Iron/manganese superoxide dismutases, C-terminal domain	superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplas ...	superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.	Domain
JA [auth Cv]	PF16113	Enoyl-CoA hydratase/isomerase (ECH_2)	Enoyl-CoA hydratase/isomerase	This family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from Pfam:PF00378 in the structure of it's ...	This family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from Pfam:PF00378 in the structure of it's C-terminus.	Domain
I [auth DQ]	PF10469	AKAP7 2'5' RNA ligase-like domain (AKAP7_NLS)	AKAP7 2'5' RNA ligase-like domain	AKAP7_NLS is the N-terminal domain of the cyclic AMP-dependent protein kinase A, PKA, anchor protein AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes [1]. AKAP7_NLS carries t ...	AKAP7_NLS is the N-terminal domain of the cyclic AMP-dependent protein kinase A, PKA, anchor protein AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes [1]. AKAP7_NLS carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein [2]. Binding to the regulatory subunits RI and RII of PKA is mediated via the family AKAP7_RIRII_bdg. at the C-terminus. This family represents a region that contains two 2'5' RNA ligase like domains Pfam:PF02834. Presumably this domain carried out some as yet unknown enzymatic function.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth DA]	mS48	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
J [auth DR]	mS65	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit organelle lumen ribonucleoprotein complex intracellular non-membrane-bounded organelle
K [auth DS]	mS66	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
L [auth DU]	mS68	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
M [auth DZ]	mS73	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
N [auth Da]	mS74	-	-	-
O [auth CE]	mS55m	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle
P [auth CF]	bS6m	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
Q [auth CH]	uS8m	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle kinetoplast protein-containing complex small ribosomal subunit ribosomal subunit organellar ribosome ribonucleoprotein complex membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle kinetoplast protein-containing complex small ribosomal subunit ribosomal subunit organellar ribosome ribonucleoprotein complex intracellular non-membrane-bounded organelle organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome organelle lumen
R [auth CI]	uS9m	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
S [auth CK]	uS11m	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
B [auth DD]	mS51	-	cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process mitochondrial gene expression gene expression macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process mitochondrial RNA processing organic cyclic compound metabolic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process mitochondrial gene expression gene expression macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process mitochondrial RNA processing organic cyclic compound metabolic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process macromolecule metabolic process mitochondrial RNA metabolic process RNA processing	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle mitochondrial protein-containing complex protein-containing complex catalytic complex mRNA editing complex mitochondrial mRNA editing complex
T [auth CL]	uS12m	-	-	-
U [auth CO]	uS15m	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
V [auth CP]	bS16m	-	-	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle
W [auth CQ]	uS17m	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex small ribosomal subunit ribosomal subunit organellar ribosome ribonucleoprotein complex intracellular non-membrane-bounded organelle membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex small ribosomal subunit ribosomal subunit organellar ribosome ribonucleoprotein complex intracellular non-membrane-bounded organelle organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome organelle lumen
X [auth CR]	bS18m	RNA binding binding organic cyclic compound binding nucleic acid binding	regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization mRNA catabolic process regulation of biological process cellular metabolic process negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process nucleobase-containing compound catabolic process organic cyclic compound metabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process negative regulation of RNA metabolic process catabolic process cellular biosynthetic process positive regulation of biological process RNA metabolic process positive regulation of cellular metabolic process macromolecule catabolic process negative regulation of mRNA metabolic process regulation of mRNA catabolic process organic substance metabolic process positive regulation of biosynthetic process negative regulation of cellular process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of catabolic process biological regulation negative regulation of mRNA catabolic process negative regulation of RNA catabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound catabolic process regulation of cellular biosynthetic process regulation of mRNA stability RNA stabilization negative regulation of biosynthetic process positive regulation of gene expression regulation of RNA stability cellular process regulation of mRNA metabolic process organic substance catabolic process positive regulation of cellular biosynthetic process	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle
Y [auth CU]	uS21m	-	-	-
Z [auth CZ]	mt-IF-3	-	-	-
AA [auth Ca]	mS22	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit organelle lumen ribonucleoprotein complex intracellular non-membrane-bounded organelle
BA [auth Cb]	mS23	-	-	membrane-bounded organelle intracellular anatomical structure ciliary plasm cilium cellular anatomical entity cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection cell projection organelle cytoplasm protein-containing complex mitochondrion membrane-enclosed lumen membrane-bounded organelle intracellular anatomical structure ciliary plasm cilium cellular anatomical entity cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection cell projection organelle cytoplasm protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membrane-bounded organelle organelle lumen ribonucleoprotein complex intracellular non-membrane-bounded organelle
CA [auth Cd]	mS26	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
C [auth DI]	mS56	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
DA [auth Cj]	mS34	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
EA [auth Cm]	mS37	-	-	intracellular anatomical structure cytoplasm cellular anatomical entity
FA [auth Cn]	mS38	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle kinetoplast
GA [auth Cp]	mS41	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit organelle lumen ribonucleoprotein complex intracellular non-membrane-bounded organelle
HA [auth Cq]	mS42	cation binding ion binding binding metal ion binding small molecule binding superoxide dismutase activity oxidoreductase activity, acting on superoxide radicals as acceptor oxidoreductase activity antioxidant activity catalytic activity	-	-
IA [auth Cr]	mS43	cation binding ion binding binding metal ion binding small molecule binding superoxide dismutase activity oxidoreductase activity, acting on superoxide radicals as acceptor oxidoreductase activity antioxidant activity catalytic activity	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
JA [auth Cv]	mS47	enoyl-CoA hydratase activity hydro-lyase activity lyase activity catalytic activity carbon-oxygen lyase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor oxidoreductase activity 3-hydroxyisobutyryl-CoA hydrolase activity short-chain fatty acyl-CoA dehydrogenase activity acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors	catabolic process oxoacid metabolic process organic acid catabolic process organic acid metabolic process cellular lipid catabolic process cellular catabolic process organic substance metabolic process monocarboxylic acid catabolic process fatty acid oxidation carboxylic acid catabolic process fatty acid beta-oxidation small molecule metabolic process lipid oxidation fatty acid metabolic process catabolic process oxoacid metabolic process organic acid catabolic process organic acid metabolic process cellular lipid catabolic process cellular catabolic process organic substance metabolic process monocarboxylic acid catabolic process fatty acid oxidation carboxylic acid catabolic process fatty acid beta-oxidation small molecule metabolic process lipid oxidation fatty acid metabolic process lipid catabolic process cellular metabolic process carboxylic acid metabolic process primary metabolic process lipid modification fatty acid catabolic process cellular lipid metabolic process metabolic process cellular process monocarboxylic acid metabolic process small molecule catabolic process organic substance catabolic process lipid metabolic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit organelle lumen ribonucleoprotein complex intracellular non-membrane-bounded organelle
KA [auth CA]	9S rRNA	-	-	-
LA [auth UQ]	Unknown protein	-	-	-
MA [auth UR]	Unknown protein	-	-	-
D [auth DL]	mS59	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
NA [auth US]	Unknown protein	-	-	-
OA [auth UT]	Unknown protein	-	-	-
E [auth DM]	mS60	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
F [auth DN]	mS61	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
G [auth DO]	mS62	-	regulation of biological process biological process involved in interspecies interaction between organisms modulation of formation of structure involved in a symbiotic process biological regulation formation of structure involved in a symbiotic process response to stimulus signaling quorum sensing cell-cell signaling detection of cell density detection of biotic stimulus response to biotic stimulus cell communication detection of stimulus regulation of biological process biological process involved in interspecies interaction between organisms modulation of formation of structure involved in a symbiotic process biological regulation formation of structure involved in a symbiotic process response to stimulus signaling quorum sensing cell-cell signaling detection of cell density detection of biotic stimulus response to biotic stimulus cell communication detection of stimulus cellular process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
H [auth DP]	mS63	-	-	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle
I [auth DQ]	mS64	protein kinase A binding protein binding binding protein kinase A regulatory subunit binding	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling biological regulation regulation of signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus regulation of protein kinase A signaling regulation of cell communication cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling biological regulation regulation of signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus regulation of protein kinase A signaling regulation of cell communication protein kinase A signaling cellular process signal transduction	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
K [auth DS]	IPR025487	Probable Zinc-ribbon domain	Domain
L [auth DU]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
L [auth DU]	IPR000626	Ubiquitin-like domain	Domain
O [auth CE]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
P [auth CF]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
Q [auth CH]	IPR000630	Small ribosomal subunit protein uS8	Family
Q [auth CH]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
R [auth CI]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
R [auth CI]	IPR000754	Small ribosomal subunit protein uS9	Family
R [auth CI]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
S [auth CK]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
B [auth DD]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
U [auth CO]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
W [auth CQ]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
W [auth CQ]	IPR000266	Small ribosomal subunit protein uS17	Family
X [auth CR]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
GA [auth Cp]	IPR039603	Small ribosomal subunit protein mS41	Family
GA [auth Cp]	IPR019083	IGR domain	Domain
HA [auth Cq]	IPR036324	Manganese/iron superoxide dismutase, N-terminal domain superfamily	Homologous Superfamily
HA [auth Cq]	IPR019832	Manganese/iron superoxide dismutase, C-terminal	Domain
HA [auth Cq]	IPR036314	Manganese/iron superoxide dismutase, C-terminal domain superfamily	Homologous Superfamily
IA [auth Cr]	IPR019832	Manganese/iron superoxide dismutase, C-terminal	Domain
IA [auth Cr]	IPR047002	T-complex protein 10, C-terminal domain superfamily	Homologous Superfamily
IA [auth Cr]	IPR036314	Manganese/iron superoxide dismutase, C-terminal domain superfamily	Homologous Superfamily
JA [auth Cv]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
JA [auth Cv]	IPR032259	Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type	Family
JA [auth Cv]	IPR045004	Enoyl-CoA hydratase/isomerase domain	Domain
E [auth DM]	IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	Homologous Superfamily
I [auth DQ]	IPR019510	A-kinase anchor protein 7-like, phosphoesterase domain	Domain
I [auth DQ]	IPR009097	Cyclic phosphodiesterase	Homologous Superfamily