6H9E | pdb_00006h9e

Structure of glutamate mutase reconstituted with homo-coenzyme B12

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6h9eb_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Cobalamin (vitamin B12)-dependent enzymes	Glutamate mutase, large subunit	Glutamate mutase, large subunit	(Clostridium cochlearium ) [TaxId: 1494 ],	SCOPe (2.08)
D	d6h9ed_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Cobalamin (vitamin B12)-dependent enzymes	Glutamate mutase, large subunit	Glutamate mutase, large subunit	(Clostridium cochlearium ) [TaxId: 1494 ],	SCOPe (2.08)
A	d6h9ea_	Alpha and beta proteins (a/b)	Flavodoxin-like	Cobalamin (vitamin B12)-binding domain	Cobalamin (vitamin B12)-binding domain	Glutamate mutase, small subunit	(Clostridium cochlearium ) [TaxId: 1494 ],	SCOPe (2.08)
C	d6h9ec_	Alpha and beta proteins (a/b)	Flavodoxin-like	Cobalamin (vitamin B12)-binding domain	Cobalamin (vitamin B12)-binding domain	Glutamate mutase, small subunit	(Clostridium cochlearium ) [TaxId: 1494 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Cobalamin (vitamin B12)-dependent enzymes	8043856	3000609	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cobalamin (vitamin B12)-dependent enzymes	8043856	3000609	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cobalamin (vitamin B12)-binding domain	8044100	3001260	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cobalamin (vitamin B12)-binding domain	8044100	3001260	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Oxidored_nitro,DUF3364	e6h9eB1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Oxidored_nitro,DUF3364	ECOD (v294.1)
D	ubiquitin	e6h9eD1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)
A	Oxidored_nitro,DUF3364	e6h9eA1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Oxidored_nitro,DUF3364	ECOD (v294.1)
C	ubiquitin	e6h9eC1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ubiquitin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.20.20.240	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Methylmalonyl-CoA mutase	CATH (utative)
B	3.90.970.10	Alpha Beta	Alpha-Beta Complex	Glutamate mutase, C-terminal domain		CATH (utative)
D	3.20.20.240	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Methylmalonyl-CoA mutase	CATH (utative)
D	3.90.970.10	Alpha Beta	Alpha-Beta Complex	Glutamate mutase, C-terminal domain		CATH (utative)
A	3.40.50.280	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Cobalamin-binding domain	CATH (utative)
C	3.40.50.280	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Cobalamin-binding domain	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Glutamate mutase epsilon subunit	vitamin binding binding cobalamin binding tetrapyrrole binding heterocyclic compound binding small molecule binding isomerase activity methylaspartate mutase activity catalytic activity intramolecular transferase activity	-	-
A, C	Glutamate mutase sigma subunit	vitamin binding binding cobalamin binding tetrapyrrole binding heterocyclic compound binding small molecule binding isomerase activity methylaspartate mutase activity catalytic activity intramolecular transferase activity cation binding ion binding metal ion binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR014714	Glutamate mutase E subunit, C-terminal domain superfamily	Homologous Superfamily
B, D	IPR016176	Cobalamin (vitamin B12)-dependent enzyme, catalytic	Homologous Superfamily
B, D	IPR006396	Glutamate mutase epsilon subunit	Family
A, C	IPR036724	Cobalamin-binding domain superfamily	Homologous Superfamily
A, C	IPR006158	Cobalamin (vitamin B12)-binding domain	Domain
A, C	IPR006394	Glutamate mutase sigma subunit	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.