6H6Y
GI.1 human norovirus protruding domain in complex with Nano-7
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | Astrovirus capsid protein P1 domain-like | 8093126 | 3002535 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Norovirus P2 domain-like | 8093128 | 3002678 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Astrovirus capsid protein P1 domain-like | 8093126 | 3002535 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Astrovirus capsid protein P1 domain-like | 8093126 | 3002535 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Norovirus P2 domain-like | 8093128 | 3002678 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Astrovirus capsid protein P1 domain-like | 8093126 | 3002535 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Astrovirus capsid protein P1 domain-like | 8093126 | 3002535 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Astrovirus capsid protein P1 domain-like | 8093126 | 3002535 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Norovirus P2 domain-like | 8093128 | 3002678 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Astrovirus capsid protein P1 domain-like | 8093126 | 3002535 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Norovirus P2 domain-like | 8093128 | 3002678 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Astrovirus capsid protein P1 domain-like | 8093126 | 3002535 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | PF00915,PF08435 | e6h6yD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00915,PF08435 | ECOD (1.6) |
A | PF00915,PF08435 | e6h6yA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00915,PF08435 | ECOD (1.6) |
B | PF00915,PF08435 | e6h6yB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00915,PF08435 | ECOD (1.6) |
C | PF00915,PF08435 | e6h6yC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00915,PF08435 | ECOD (1.6) |
F | PF07686 | e6h6yF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
G | PF07686 | e6h6yG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E | PF07686 | e6h6yE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H | PF07686 | e6h6yH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (4.3.0) |
D | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
A | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (4.3.0) |
A | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
B | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (4.3.0) |
B | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
C | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (4.3.0) |
C | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | capsid protein vp1 | SAbDab (2024-04-26) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Capsid protein VP1 | - | |||
Nanobody (VHH) Nano-7 | - | - | - |