6H5I
Single Particle Cryo-EM map of human Transferrin receptor 1 - H-Ferritin complex.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth Aa] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
C [auth Ac] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
D [auth Ad] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
E [auth Ae] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
F [auth Af] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
G [auth Ag] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
H [auth Ah] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
I [auth Ai] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
K [auth Ak] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
L [auth Al] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
M [auth Am] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
N [auth An] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
O [auth Ao] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
P [auth Ap] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
R [auth Ar] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
S [auth As] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
T [auth At] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
U [auth Au] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
V [auth Av] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
W [auth Aw] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
X [auth Ax] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
J [auth Aj] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
Y [auth Ay] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
Z [auth Az] | SCOP2B Superfamily | Ferritin-like | 8038756 | 3001658 | SCOP2B (2022-06-29) |
Q [auth Aq] | SCOP2B Superfamily | PA domain | 8043922 | 3000955 | SCOP2B (2022-06-29) |
Q [auth Aq] | SCOP2B Superfamily | Transferrin receptor-like dimerisation domain | 8037591 | 3000375 | SCOP2B (2022-06-29) |
Q [auth Aq] | SCOP2B Superfamily | Zn-dependent exopeptidases | 8032205 | 3000662 | SCOP2B (2022-06-29) |
Q [auth Aq] | SCOP2B Superfamily | Zn-dependent exopeptidases | 8032205 | 3000662 | SCOP2B (2022-06-29) |
B [auth Ab] | SCOP2B Superfamily | PA domain | 8043922 | 3000955 | SCOP2B (2022-06-29) |
B [auth Ab] | SCOP2B Superfamily | Zn-dependent exopeptidases | 8032205 | 3000662 | SCOP2B (2022-06-29) |
B [auth Ab] | SCOP2B Superfamily | Zn-dependent exopeptidases | 8032205 | 3000662 | SCOP2B (2022-06-29) |
B [auth Ab] | SCOP2B Superfamily | Transferrin receptor-like dimerisation domain | 8037591 | 3000375 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth Aa] | Ferritin | e6h5iAa1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
C [auth Ac] | Ferritin | e6h5iAc1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
D [auth Ad] | Ferritin | e6h5iAd1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
E [auth Ae] | Ferritin | e6h5iAe1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
F [auth Af] | Ferritin | e6h5iAf1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
G [auth Ag] | Ferritin | e6h5iAg1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
H [auth Ah] | Ferritin | e6h5iAh1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
I [auth Ai] | Ferritin | e6h5iAi1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
K [auth Ak] | Ferritin | e6h5iAk1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
L [auth Al] | Ferritin | e6h5iAl1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
M [auth Am] | Ferritin | e6h5iAm1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
N [auth An] | Ferritin | e6h5iAn1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
O [auth Ao] | Ferritin | e6h5iAo1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
P [auth Ap] | Ferritin | e6h5iAp1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
R [auth Ar] | Ferritin | e6h5iAr1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
S [auth As] | Ferritin | e6h5iAs1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
T [auth At] | Ferritin | e6h5iAt1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
U [auth Au] | Ferritin | e6h5iAu1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
V [auth Av] | Ferritin | e6h5iAv1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
W [auth Aw] | Ferritin | e6h5iAw1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
X [auth Ax] | Ferritin | e6h5iAx1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
J [auth Aj] | Ferritin | e6h5iAj1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
Y [auth Ay] | Ferritin | e6h5iAy1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
Z [auth Az] | Ferritin | e6h5iAz1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin | ECOD (1.6) |
Q [auth Aq] | TFR_dimer | e6h5iAq1 | A: alpha bundles | X: N-cbl like | H: Transferrin receptor ectodomain, C-terminal domain (From Topology) | T: Transferrin receptor ectodomain, C-terminal domain | F: TFR_dimer | ECOD (1.6) |
Q [auth Aq] | Peptidase_M28 | e6h5iAq3 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Zn-dependent exopeptidases (From Topology) | T: Zn-dependent exopeptidases | F: Peptidase_M28 | ECOD (1.6) |
Q [auth Aq] | PA | e6h5iAq2 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: PA | ECOD (1.6) |
B [auth Ab] | TFR_dimer | e6h5iAb1 | A: alpha bundles | X: N-cbl like | H: Transferrin receptor ectodomain, C-terminal domain (From Topology) | T: Transferrin receptor ectodomain, C-terminal domain | F: TFR_dimer | ECOD (1.6) |
B [auth Ab] | Peptidase_M28 | e6h5iAb3 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Zn-dependent exopeptidases (From Topology) | T: Zn-dependent exopeptidases | F: Peptidase_M28 | ECOD (1.6) |
B [auth Ab] | PA | e6h5iAb2 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: PA | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00210 | Ferritin-like domain (Ferritin) | Ferritin-like domain | This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. | Domain | |
B [auth Ab], Q [auth Aq] | PF04253 | Transferrin receptor-like dimerisation domain (TFR_dimer) | Transferrin receptor-like dimerisation domain | This domain is involved in dimerisation of the transferrin receptor as shown in its crystal structure. | Domain |
B [auth Ab], Q [auth Aq] | PF04389 | Peptidase family M28 (Peptidase_M28) | Peptidase family M28 | - | Family |
B [auth Ab], Q [auth Aq] | PF02225 | PA domain (PA) | PA domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009040 | Ferritin-like diiron domain | Domain | |
IPR012347 | Ferritin-like | Homologous Superfamily | |
IPR009078 | Ferritin-like superfamily | Homologous Superfamily | |
IPR001519 | Ferritin | Family | |
IPR014034 | Ferritin, conserved site | Conserved Site | |
IPR008331 | Ferritin/DPS protein domain | Domain | |
B [auth Ab], Q [auth Aq] | IPR036757 | Transferrin receptor-like, dimerisation domain superfamily | Homologous Superfamily |
B [auth Ab], Q [auth Aq] | IPR039373 | Transferrin receptor protein 1/Glutamate carboxypeptidase 2-like | Family |
B [auth Ab], Q [auth Aq] | IPR003137 | PA domain | Domain |
B [auth Ab], Q [auth Aq] | IPR046450 | PA domain superfamily | Homologous Superfamily |
B [auth Ab], Q [auth Aq] | IPR007365 | Transferrin receptor-like, dimerisation domain | Domain |
B [auth Ab], Q [auth Aq] | IPR037324 | Transferrin receptor protein 1/2, PA domain | Domain |
B [auth Ab], Q [auth Aq] | IPR007484 | Peptidase M28 | Domain |