6GX9 | pdb_00006gx9

Crystal structure of the TNPO3 - CPSF6 RSLD complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Xpo1_1	e6gx9B1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Xpo1_1	ECOD (1.6)
A	Xpo1_1	e6gx9A1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Xpo1_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF24138	Transportin-3/Importin-13 second TPR domain (TPR_TNPO3_IPO13_2nd)	Transportin-3/Importin-13 second TPR domain	-	Repeat
A, B	PF24139	Transportin-3/Importin-13 fourth TPR domain (TPR_TNPO3_IPO13_4th)	Transportin-3/Importin-13 fourth TPR domain	-	Repeat
A, B	PF08389	Exportin 1-like protein (Xpo1)	Exportin 1-like protein	-	Repeat
A, B	PF24140	Transportin-3/Importin-13 third TPR domain (TPR_TNPO3_IPO13_3rd)	Transportin-3/Importin-13 third TPR domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Cleavage and polyadenylation specificity factor subunit 6	RNA binding binding nucleic acid binding mRNA binding ribonucleoprotein complex binding protein-containing complex binding ribosomal large subunit binding ribosome binding exon-exon junction complex binding	protein-containing complex organization protein heterotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly cellular process cellular component organization or biogenesis protein heterooligomerization regulation of localization cellular localization nitrogen compound transport protein-containing complex organization protein heterotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly cellular process cellular component organization or biogenesis protein heterooligomerization regulation of localization cellular localization nitrogen compound transport regulation of cellular process nucleocytoplasmic transport transport positive regulation of nucleocytoplasmic transport nuclear transport positive regulation of biological process positive regulation of nucleobase-containing compound transport localization positive regulation of RNA export from nucleus establishment of localization in cell positive regulation of intracellular transport RNA localization nuclear export nucleobase-containing compound transport positive regulation of cellular process regulation of intracellular transport regulation of biological process RNA transport regulation of transport regulation of nucleobase-containing compound transport regulation of RNA export from nucleus nucleic acid transport biological regulation intracellular transport regulation of nucleocytoplasmic transport establishment of localization RNA export from nucleus establishment of RNA localization positive regulation of transport regulation of cellular localization macromolecule localization mRNA 3'-end processing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process mRNA alternative polyadenylation RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing metabolic process RNA processing macromolecule metabolic process co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway	membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle nucleus nuclear protein-containing complex mRNA cleavage factor complex intracellular membrane-bounded organelle membrane-enclosed lumen perichromatin fibrils nuclear chromosome intracellular membraneless organelle membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle nucleus nuclear protein-containing complex mRNA cleavage factor complex intracellular membrane-bounded organelle membrane-enclosed lumen perichromatin fibrils nuclear chromosome intracellular membraneless organelle chromosome chromatin intracellular organelle lumen organelle lumen membraneless organelle nuclear lumen membrane nuclear speck ribonucleoprotein granule nuclear body nucleoplasm supramolecular complex nuclear ribonucleoprotein granule paraspeckles cytoplasm interchromatin granule ribonucleoprotein complex mRNA cleavage and polyadenylation specificity factor complex
A, B	Transportin-3	small GTPase binding protein binding binding enzyme binding GTPase binding nuclear import signal receptor activity nucleocytoplasmic carrier activity molecular carrier activity identical protein binding	establishment of protein localization cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization localization import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell macromolecule localization establishment of protein localization cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization localization import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell macromolecule localization protein localization to organelle protein import into nucleus cellular process intracellular protein localization intracellular protein transport	membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system cytoplasm cytosol membrane nuclear outer membrane-endoplasmic reticulum membrane network membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system cytoplasm cytosol membrane nuclear outer membrane-endoplasmic reticulum membrane network annulate lamellae membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR000504	RNA recognition motif domain	Domain
C, D	IPR034772	CPSF6/7	Family
C, D	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
C, D	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
C, D	IPR034769	Cleavage and polyadenylation specificity factor subunit 6, RNA recognition motif	Domain
A, B	IPR051345	Importin beta-like nuclear transport receptors	Family
A, B	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B	IPR013598	Exportin-1/Importin-beta-like	Domain
A, B	IPR011989	Armadillo-like helical	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	Pharos: Q16630	astrocytic tumor diabetes mellitus lung cancer myopathy pancreatic intraductal papillary-mucinous carcinoma plasma cell myeloma attention deficit hyperactivity disorder, inattentive type glioblastoma malignant mesothelioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor IgA glomerulonephritis medulloblastoma astrocytic tumor diabetes mellitus lung cancer myopathy pancreatic intraductal papillary-mucinous carcinoma plasma cell myeloma attention deficit hyperactivity disorder, inattentive type glioblastoma malignant mesothelioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor IgA glomerulonephritis medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia
A, B	Pharos: Q9Y5L0	primary biliary cholangitis autosomal dominant limb-girdle muscular dystrophy type 1F limb-girdle muscular dystrophy rheumatoid arthritis systemic sclerosis astrocytic tumor inflammatory bowel disease muscular disease myopathy ovarian cancer muscular dystrophy myositis Sjogren syndrome ulcerative colitis diffuse scleroderma primary biliary cholangitis autosomal dominant limb-girdle muscular dystrophy type 1F limb-girdle muscular dystrophy rheumatoid arthritis systemic sclerosis astrocytic tumor inflammatory bowel disease muscular disease myopathy ovarian cancer muscular dystrophy myositis Sjogren syndrome ulcerative colitis diffuse scleroderma muscle tissue disease MUSCULAR DYSTROPHY, LIMB-GIRDLE, TYPE 1F osteosarcoma psoriasis systemic lupus erythematosus

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C, D	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.