6GWK | pdb_00006gwk

The crystal structure of Hfq from Caulobacter crescentus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
X	d6gwkx_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
W	d6gwkw_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
V	d6gwkv_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
U	d6gwku_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
T	d6gwkt_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
S	d6gwks_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
R	d6gwkr_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
Q	d6gwkq_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
P	d6gwkp_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
O	d6gwko_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
N	d6gwkn_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
M	d6gwkm_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
L	d6gwkl_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
K	d6gwkk_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
J	d6gwkj_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
I	d6gwki_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
H	d6gwkh_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
G	d6gwkg_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
F	d6gwkf_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
E	d6gwke_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
D	d6gwkd_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
C	d6gwkc_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
B	d6gwkb_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)
A	d6gwka_	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	automated matches	automated matches	(Caulobacter vibrioides CB15 ) [TaxId: 190650 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
P	SCOP2 Family	Pleiotropic translational regulator Hfq	8095202	4002164	SCOP2 (2022-06-29)
P	SCOP2 Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2 (2022-06-29)
O	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Sm-like ribonucleoproteins	8095203	3000419	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	Hfq	e6gwkX1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
W	Hfq	e6gwkW1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
V	Hfq	e6gwkV1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
U	Hfq	e6gwkU1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
T	Hfq	e6gwkT1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
S	Hfq	e6gwkS1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
R	Hfq	e6gwkR1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
Q	Hfq	e6gwkQ1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
P	Hfq	e6gwkP1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
O	Hfq	e6gwkO1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
N	Hfq	e6gwkN1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
M	Hfq	e6gwkM1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
L	Hfq	e6gwkL1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
K	Hfq	e6gwkK1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
J	Hfq	e6gwkJ1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
I	Hfq	e6gwkI1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
H	Hfq	e6gwkH1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
G	Hfq	e6gwkG1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
F	Hfq	e6gwkF1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
E	Hfq	e6gwkE1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
D	Hfq	e6gwkD1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
C	Hfq	e6gwkC1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
B	Hfq	e6gwkB1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)
A	Hfq	e6gwkA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Hfq	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
X	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
W	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
V	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
U	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
T	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
S	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
R	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
Q	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
P	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
O	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
N	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
M	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
L	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
K	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
J	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
I	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
H	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
G	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
F	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
E	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
D	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
C	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
B	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)
A	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	PF21979	Hfq related (Hfq_1)	Hfq related	Hfq proteins participate in RNA folding and translational regulation through pairing of small RNAs and messenger RNAs. Hfq proteins share the distinctive Sm fold, and form ring-shaped structures similar to those of the Sm/Lsm proteins regulating mRNA ...	Hfq proteins participate in RNA folding and translational regulation through pairing of small RNAs and messenger RNAs. Hfq proteins share the distinctive Sm fold, and form ring-shaped structures similar to those of the Sm/Lsm proteins regulating mRNA turnover in eukaryotes [1-2].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	PF17209	Hfq protein (Hfq)	Hfq protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	RNA-binding protein Hfq	RNA binding binding nucleic acid binding	regulation of cellular process catabolic process RNA metabolic process macromolecule catabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process regulation of biological quality regulation of nucleobase-containing compound metabolic process RNA catabolic process regulation of biosynthetic process regulation of biological process biological regulation regulation of cellular process catabolic process RNA metabolic process macromolecule catabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process regulation of biological quality regulation of nucleobase-containing compound metabolic process RNA catabolic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound catabolic process regulation of gene expression biosynthetic process regulation of RNA stability nucleic acid catabolic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process protein biosynthetic process regulation of translation, ncRNA-mediated protein metabolic process regulation of protein metabolic process translation regulation of translation RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process regulation of DNA-templated transcription	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR010920	LSM domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR005001	RNA-binding protein Hfq	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR047575	Sm domain	Domain