6GKX

Crystal structure of the R-type bacteriocin tube protein CD1364 from Clostridium difficile in the pre-assembled state

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6gkxa_ All beta proteins Phage tail proteins Phage tail proteins automated matches automated matches Clostridium difficile (Clostridioides difficile 630 ) [TaxId: 272563 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyXkdM-like8082002 4001806 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPhage tail proteins8082003 3000268 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF09393e6gkxA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF09393ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF09393Phage tail tube protein (DUF2001)Phage tail tube proteinThis is a family of phage tail tube proteins including protein XkdM from phage-like element PBSX protein (Swiss:P54332) whose structure adopts a beta barrel flanked with alpha helical regions.Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR018989Phage tail tube proteinFamily
IPR038628XkdM-like superfamilyHomologous Superfamily