6GKF | pdb_00006gkf

Structure of 14-3-3 gamma in complex with caspase-2 14-3-3 binding motif Ser139

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
D [auth G]	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
E [auth B]	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ribosomal_L1	e6gkfA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
B [auth C]	Transglut_prok	e6gkfC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Transglut_prok	ECOD (v294.1)
C [auth E]	Ribosomal_L1	e6gkfE1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
D [auth G]	Ribosomal_L1	e6gkfG1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
F [auth D]	Ribosomal_L1	e6gkfD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
G [auth F]	Ribosomal_L1	e6gkfF1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
H	Ribosomal_L1	e6gkfH1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
E [auth B]	Ribosomal_L1	e6gkfB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
B [auth C]	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
C [auth E]	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
D [auth G]	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
F [auth D]	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
G [auth F]	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
H	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
E [auth B]	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	PF00244	14-3-3 protein (14-3-3)	14-3-3 protein	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I, J, K, L, M I, J, K, L, M, N, O, P	Caspase-2	protein binding binding protein domain specific binding cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity enzyme binding identical protein binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process positive regulation of cell communication regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process positive regulation of cell communication regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of programmed cell death regulation of apoptotic process biological regulation cell death positive regulation of apoptotic process apoptotic signaling pathway regulation of response to stimulus regulation of cell communication apoptotic process programmed cell death positive regulation of signaling regulation of apoptotic signaling pathway negative regulation of programmed cell death negative regulation of biological process negative regulation of apoptotic process negative regulation of cellular process neuron apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process execution phase of apoptosis primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process proteolysis protein processing metabolic process protein metabolic process macromolecule metabolic process signal transduction in absence of ligand cell surface receptor signaling pathway extrinsic apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand intracellular signal transduction intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway response to mechanical stimulus response to external stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus rhythmic process developmental process ovulation cycle process multicellular organismal process gonad development reproductive system development reproductive process female gonad development sex differentiation multicellular organismal reproductive process animal organ development female sex differentiation development of primary female sexual characteristics developmental process involved in reproduction ovulation cycle multicellular organism development development of primary sexual characteristics anatomical structure development reproductive structure development luteolysis system development cellular developmental process cell development programmed cell death involved in cell development cell differentiation ectopic germ cell programmed cell death signal transduction by p53 class mediator DNA damage response, signal transduction by p53 class mediator signal transduction in response to DNA damage sensory organ development eye development retina development in camera-type eye visual system development neural retina development camera-type eye development sensory system development	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytoplasm cytosol protein-containing complex catalytic complex peptidase complex endopeptidase complex
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	14-3-3 protein gamma	protein binding binding protein domain specific binding enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase C inhibitor activity protein kinase regulator activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity molecular sequestering activity protein binding binding protein domain specific binding enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase C inhibitor activity protein kinase regulator activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity molecular sequestering activity protein sequestering activity RNA binding nucleic acid binding kinase binding protein kinase C binding enzyme binding protein kinase binding protein tyrosine kinase binding signaling receptor binding receptor tyrosine kinase binding identical protein binding insulin-like growth factor receptor binding phosphorylation-dependent protein binding modification-dependent protein binding	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication cellular process signal transduction cellular response to nutrient levels cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication cellular process signal transduction cellular response to nutrient levels response to nutrient levels cellular response to stress response to stress response to starvation cellular response to glucose starvation cellular response to starvation positive regulation of cell adhesion regulation of cell adhesion positive regulation of biological process positive regulation of cell-cell adhesion cell adhesion cell-cell adhesion regulation of cell-cell adhesion positive regulation of cellular process regulation of protein modification process regulation of catalytic activity regulation of protein phosphorylation negative regulation of biological process negative regulation of phosphate metabolic process negative regulation of catalytic activity regulation of transferase activity regulation of primary metabolic process negative regulation of kinase activity phosphate-containing compound metabolic process negative regulation of protein modification process negative regulation of cellular process protein metabolic process phosphorus metabolic process protein modification process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process protein phosphorylation phosphorylation regulation of protein metabolic process negative regulation of metabolic process negative regulation of molecular function primary metabolic process negative regulation of protein kinase activity regulation of protein kinase activity regulation of macromolecule metabolic process regulation of molecular function regulation of kinase activity negative regulation of protein phosphorylation macromolecule modification negative regulation of phosphorus metabolic process regulation of phosphorylation regulation of phosphorus metabolic process metabolic process macromolecule metabolic process negative regulation of phosphorylation regulation of metabolic process adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity regulation of immune effector process T cell mediated immunity regulation of response to biotic stimulus positive regulation of leukocyte mediated immunity positive regulation of response to biotic stimulus positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains immune response to tumor cell positive regulation of lymphocyte mediated immunity regulation of response to tumor cell response to biotic stimulus positive regulation of response to stimulus T cell mediated immune response to tumor cell regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of T cell mediated immune response to tumor cell positive regulation of immune response leukocyte mediated immunity regulation of immune system process positive regulation of immune effector process positive regulation of adaptive immune response positive regulation of immune system process regulation of T cell mediated immunity response to tumor cell positive regulation of immune response to tumor cell immune response regulation of adaptive immune response regulation of immune response to tumor cell adaptive immune response immune effector process positive regulation of T cell mediated immune response to tumor cell regulation of leukocyte mediated immunity regulation of lymphocyte mediated immunity immune system process positive regulation of T cell mediated immunity regulation of immune response positive regulation of response to tumor cell developmental process multicellular organismal process regulation of developmental process cellular developmental process regulation of cell differentiation nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development regulation of neuron differentiation system development localization establishment of protein localization protein targeting establishment of localization regulation of localization regulation of protein localization macromolecule localization intracellular protein localization regulation of synaptic plasticity trans-synaptic signaling modulation of chemical synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of biological quality negative regulation of signaling negative regulation of intracellular signal transduction intracellular signal transduction negative regulation of cell communication negative regulation of TORC1 signaling regulation of intracellular signal transduction negative regulation of TOR signaling regulation of TORC1 signaling TOR signaling regulation of TOR signaling negative regulation of response to stimulus negative regulation of signal transduction TORC1 signaling cellular response to nitrogen compound response to endogenous stimulus response to peptide hormone response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical response to insulin cellular response to insulin stimulus cellular response to hormone stimulus regulation of leukocyte activation regulation of cell activation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of lymphocyte activation positive regulation of cell activation T cell activation positive regulation of leukocyte activation regulation of multicellular organismal process positive regulation of T cell activation cell activation regulation of T cell activation regulation of leukocyte cell-cell adhesion positive regulation of multicellular organismal process regulation of lymphocyte activation	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol presynapse synapse mitochondrion membrane-enclosed lumen intracellular membrane-bounded organelle mitochondrial matrix intracellular organelle lumen intracellular organelle organelle lumen nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I, J, K, L, M I, J, K, L, M, N, O, P	IPR001309	Peptidase C14, p20 domain	Domain
I, J, K, L, M I, J, K, L, M, N, O, P	IPR011600	Peptidase C14, caspase domain	Domain
I, J, K, L, M I, J, K, L, M, N, O, P	IPR016129	Peptidase family C14A, His active site	Active Site
I, J, K, L, M I, J, K, L, M, N, O, P	IPR015917	Peptidase C14A, caspase catalytic domain	Domain
I, J, K, L, M I, J, K, L, M, N, O, P	IPR011029	Death-like domain superfamily	Homologous Superfamily
I, J, K, L, M I, J, K, L, M, N, O, P	IPR029030	Caspase-like domain superfamily	Homologous Superfamily
I, J, K, L, M I, J, K, L, M, N, O, P	IPR033139	Peptidase family C14A, cysteine active site	Active Site
I, J, K, L, M I, J, K, L, M, N, O, P	IPR002138	Peptidase C14, caspase non-catalytic subunit p10	Domain
I, J, K, L, M I, J, K, L, M, N, O, P	IPR035702	Caspase-2, CARD domain	Domain
I, J, K, L, M I, J, K, L, M, N, O, P	IPR001315	CARD domain	Domain
I, J, K, L, M I, J, K, L, M, N, O, P	IPR002398	Peptidase C14 family	Family
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	IPR023409	14-3-3 protein, conserved site	Conserved Site
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	IPR023410	14-3-3 domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	IPR036815	14-3-3 domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	IPR000308	14-3-3 protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
I, J, K, L, M I, J, K, L, M, N, O, P	Pharos: P42575	renal cell carcinoma intellectual disability chromophobe renal cell carcinoma sarcomatoid renal cell carcinoma papillary renal cell carcinoma collecting duct carcinoma oligodendroglioma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor adrenal cortex carcinoma Conventional (Clear Cell) Renal Cell Carcinoma gastric carcinoma juvenile dermatomyositis malignant glioma osteosarcoma renal cell carcinoma intellectual disability chromophobe renal cell carcinoma sarcomatoid renal cell carcinoma papillary renal cell carcinoma collecting duct carcinoma oligodendroglioma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor adrenal cortex carcinoma Conventional (Clear Cell) Renal Cell Carcinoma gastric carcinoma juvenile dermatomyositis malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma atypical teratoid rhabdoid tumor clear cell renal carcinoma exocrine pancreatic carcinoma glioblastoma large cell medulloblastoma malignant pancreatic neoplasm ovarian cancer renal carcinoma breast cancer gastric cancer lung cancer medulloblastoma
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	Pharos: P61981	Liver Cirrhosis, Experimental pilocytic astrocytoma astrocytic tumor developmental and epileptic encephalopathy, 56 hepatocellular carcinoma malignant glioma pancreatic ductal adenocarcinoma tuberculosis atypical teratoid rhabdoid tumor epilepsy exocrine pancreatic carcinoma intellectual disability lung adenocarcinoma malignant pancreatic neoplasm Parkinson disease Liver Cirrhosis, Experimental pilocytic astrocytoma astrocytic tumor developmental and epileptic encephalopathy, 56 hepatocellular carcinoma malignant glioma pancreatic ductal adenocarcinoma tuberculosis atypical teratoid rhabdoid tumor epilepsy exocrine pancreatic carcinoma intellectual disability lung adenocarcinoma malignant pancreatic neoplasm Parkinson disease breast cancer glioblastoma large cell medulloblastoma malignant ependymoma oligodendroglioma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
I, J, K, L, M I, J, K, L, M, N, O, P	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.