6GH8
Crystal structure of GP1 domain of Lujo virus in complex with the first CUB domain of neuropilin-2
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | F_UNCLASSIFIED | e6gh8D1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth B] | F_UNCLASSIFIED | e6gh8B1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth A] | PF00431 | e6gh8A1 | A: beta sandwiches | X: jelly-roll | H: Spermadhesin, CUB domain (From Topology) | T: Spermadhesin, CUB domain | F: PF00431 | ECOD (1.6) |
D [auth C] | PF00431 | e6gh8C1 | A: beta sandwiches | X: jelly-roll | H: Spermadhesin, CUB domain (From Topology) | T: Spermadhesin, CUB domain | F: PF00431 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 2.60.120.290 | Mainly Beta | Sandwich | Jelly Rolls | Spermadhesin, CUB domain | CATH (4.3.0) |
D [auth C] | 2.60.120.290 | Mainly Beta | Sandwich | Jelly Rolls | Spermadhesin, CUB domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A], D [auth C] | PF00431 | CUB domain (CUB) | CUB domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth D], C [auth B] | IPR043015 | Arenavirus glycoprotein, zinc binding domain | Homologous Superfamily |
A [auth D], C [auth B] | IPR001535 | Arenavirus glycoprotein | Family |
B [auth A], D [auth C] | IPR035914 | Spermadhesin, CUB domain superfamily | Homologous Superfamily |
B [auth A], D [auth C] | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily |
B [auth A], D [auth C] | IPR000421 | Coagulation factor 5/8 C-terminal domain | Domain |
B [auth A], D [auth C] | IPR014648 | Neuropilin | Family |
B [auth A], D [auth C] | IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily |
B [auth A], D [auth C] | IPR000998 | MAM domain | Domain |
B [auth A], D [auth C] | IPR000859 | CUB domain | Domain |
B [auth A], D [auth C] | IPR022579 | Neuropilin, C-terminal | Domain |