6GCU | pdb_00006gcu

MET receptor in complex with InlB internalin domain and DARPin A3A

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Plexin repeat-like	8039466	3000415	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Sema domain-like	8039465	3000180	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Plexin repeat-like	8039466	3000415	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Sema domain-like	8039465	3000180	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	RRM_1	e6gcuF1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains	T: HUP domains	F: RRM_1	ECOD (v294.1)
C	C1-set	e6gcuC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
E	RRM_1	e6gcuE1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains	T: HUP domains	F: RRM_1	ECOD (v294.1)
B	C1-set	e6gcuB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
D	RRM_1	e6gcuD1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains	T: HUP domains	F: RRM_1	ECOD (v294.1)
A	C1-set	e6gcuA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D	PF01437	Plexin repeat (PSI)	Plexin repeat	-	Family
A, D	PF01833	IPT/TIG domain (TIG)	IPT/TIG domain	This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family d ...	This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognise a significant number of members.	Domain
A, D	PF01403	Sema domain (Sema)	Sema domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F	DARPin A3A	-	-	-
B, E	Internalin B	binding lipid binding cation binding ion binding metal ion binding small molecule binding heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding	biological process involved in interspecies interaction between organisms entry of bacterium into host cell symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction	cellular anatomical structure extracellular region cell surface cell periphery plasma membrane membrane external encapsulating structure cell wall peptidoglycan-based cell wall
A, D	Hepatocyte growth factor receptor	molecular transducer activity transmembrane signaling receptor activity signaling receptor activity semaphorin receptor activity protein phosphatase binding phosphatase binding protein binding binding enzyme binding protein tyrosine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity molecular transducer activity transmembrane signaling receptor activity signaling receptor activity semaphorin receptor activity protein phosphatase binding phosphatase binding protein binding binding enzyme binding protein tyrosine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding molecular function activator activity molecular function regulator activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity hepatocyte growth factor receptor activity identical protein binding	developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development epithelium development endothelial cell differentiation cellular developmental process endothelium development cell development developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development epithelium development endothelial cell differentiation cellular developmental process endothelium development cell development tissue development epithelial cell differentiation cell morphogenesis endothelial cell development anatomical structure morphogenesis epithelial cell development endothelial cell morphogenesis epithelial cell morphogenesis cell differentiation cellular process tube development branching morphogenesis of an epithelial tube morphogenesis of an epithelium tissue morphogenesis tube morphogenesis morphogenesis of a branching structure epithelial tube morphogenesis morphogenesis of a branching epithelium regulation of hydrogen peroxide-mediated programmed cell death cellular response to stimulus regulation of cellular process response to stimulus programmed cell death in response to reactive oxygen species cellular response to oxidative stress negative regulation of biological process regulation of programmed cell death cellular response to chemical stress negative regulation of hydrogen peroxide-mediated programmed cell death cellular response to reactive oxygen species hydrogen peroxide-mediated programmed cell death cellular response to stress response to stress negative regulation of cellular process regulation of biological process negative regulation of programmed cell death biological regulation response to oxygen-containing compound cell death cellular response to oxygen-containing compound response to reactive oxygen species response to oxidative stress cellular response to chemical stimulus response to chemical programmed cell death positive chemotaxis chemotaxis taxis response to external stimulus locomotion nervous system development generation of neurons neurogenesis neuron differentiation cell surface receptor signaling pathway signaling cell surface receptor protein tyrosine kinase signaling pathway cell communication hepatocyte growth factor receptor signaling pathway signal transduction enzyme-linked receptor protein signaling pathway regulation of postsynaptic membrane potential system process chemical synaptic transmission, postsynaptic synaptic signaling regulation of biological quality trans-synaptic signaling nervous system process cell-cell signaling chemical synaptic transmission anterograde trans-synaptic signaling excitatory postsynaptic potential regulation of membrane potential pancreas development positive regulation of locomotion regulation of cell motility regulation of response to external stimulus endothelial cell migration positive regulation of biological process positive regulation of chemotaxis positive regulation of cell migration positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of cell motility regulation of cell migration positive regulation of endothelial cell chemotaxis regulation of endothelial cell migration cell migration endothelial cell chemotaxis cell motility positive regulation of cellular process cell chemotaxis regulation of endothelial cell chemotaxis regulation of chemotaxis regulation of response to stimulus regulation of locomotion positive regulation of endothelial cell migration semaphorin-plexin signaling pathway negative regulation of catabolic process catabolic process negative regulation of metabolic process autophagy regulation of catabolic process regulation of autophagy negative regulation of autophagy metabolic process process utilizing autophagic mechanism regulation of metabolic process positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription	cellular anatomical structure membrane cell periphery basal part of cell plasma membrane basal plasma membrane plasma membrane region cell surface protein-containing complex signaling receptor complex extracellular region postsynapse synapse cell junction

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, E	IPR025875	Leucine rich repeat 4	Repeat
B, E	IPR025987	GW domain	Domain
B, E	IPR013378	Internalin B-like, B-repeat	Repeat
B, E	IPR001611	Leucine-rich repeat	Repeat
B, E	IPR038200	GW domain superfamily	Homologous Superfamily
B, E	IPR012569	Internalin, Ig-like inter-repeat region	Domain
B, E	IPR024634	Internalin, N-terminal	Domain
B, E	IPR042229	Listeria-Bacteroides repeat domain superfamily	Homologous Superfamily
B, E	IPR003591	Leucine-rich repeat, typical subtype	Repeat
B, E	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
B, E	IPR014756	Immunoglobulin E-set	Homologous Superfamily
B, E	IPR014755	Copper resistance protein CopC/internalin, immunoglobulin-like	Homologous Superfamily
B, E	IPR050836	SDS22/Internalin LRR-containing	Family
A, D	IPR017441	Protein kinase, ATP binding site	Binding Site
A, D	IPR002909	IPT domain	Domain
A, D	IPR008266	Tyrosine-protein kinase, active site	Active Site
A, D	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
A, D	IPR016201	PSI domain	Domain
A, D	IPR016244	Tyrosine-protein kinase, HGF/MSP receptor	Family
A, D	IPR000719	Protein kinase domain	Domain
A, D	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, D	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
A, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, D	IPR002165	Plexin repeat	Repeat
A, D	IPR031148	Plexin family	Family
A, D	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, D	IPR036352	Sema domain superfamily	Homologous Superfamily
A, D	IPR001627	Sema domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, D	Pharos: P08581	squamous cell carcinoma hepatocellular carcinoma glioblastoma renal cell carcinoma neuroblastoma osteosarcoma papillary renal cell carcinoma acute myeloid leukemia non-small cell lung carcinoma osteofibrous dysplasia ovarian cancer cancer nonsyndromic genetic deafness esophageal cancer autosomal recessive nonsyndromic deafness 97 squamous cell carcinoma hepatocellular carcinoma glioblastoma renal cell carcinoma neuroblastoma osteosarcoma papillary renal cell carcinoma acute myeloid leukemia non-small cell lung carcinoma osteofibrous dysplasia ovarian cancer cancer nonsyndromic genetic deafness esophageal cancer autosomal recessive nonsyndromic deafness 97 giant cell glioblastoma granular cell carcinoma sarcomatoid renal cell carcinoma Hepatitis, Chronic adenocarcinoma juvenile pilocytic astrocytoma lung cancer fibrillary astrocytoma protoplasmic astrocytoma schizophrenia collecting duct carcinoma astrocytic tumor pilocytic astrocytoma gastric cancer prostate cancer gemistocytic astrocytoma carcinoma sarcomatoid carcinoma childhood cerebral astrocytoma sinusitis chromophobe renal cell carcinoma subependymal giant cell astrocytoma tubular adenocarcinoma anaplastic astrocytoma malignant mesothelioma benign neoplasm of stomach malignant pancreatic neoplasm breast disease renal carcinoma hereditary diffuse gastric adenocarcinoma interstitial lung disease adrenal medulla cancer cribriform carcinoma of breast attention deficit hyperactivity disorder, inattentive type pancreatic intraductal papillary-mucinous neoplasm esophageal adenocarcinoma benign neoplasm of adrenal gland primitive neuroectodermal tumor gastric neoplasm breast cancer medullary thyroid gland carcinoma head and neck squamous cell carcinoma cerebral astrocytoma hepatoblastoma cholangiocarcinoma stomach carcinoma in situ tuberculosis hereditary papillary renal cell carcinoma ulcerative colitis large cell medulloblastoma ovarian neoplasm lung carcinoma atypical teratoid rhabdoid tumor pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia malignant colon neoplasm breast carcinoma psoriasis medulloblastoma hepatitis neoplasm of esophagus non-alcoholic fatty liver disease clear cell renal carcinoma intellectual disability invasive ductal breast carcinoma oligodendroglioma colorectal adenocarcinoma undifferentiated carcinoma liver cancer cribriform carcinoma lung benign neoplasm astrocytoma (excluding glioblastoma) pancreatic intraductal papillary-mucinous carcinoma diffuse astrocytoma lung disease autism Barrett esophagus pituitary cancer gastric carcinoma