6GAW

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth B6]SCOP2 FamilyRibosomal protein L33p8075059 4000511 SCOP2 (2022-06-29)
M [auth B6]SCOP2 SuperfamilyZn-binding ribosomal proteins8075060 3001320 SCOP2 (2022-06-29)
W [auth BI]SCOP2B SuperfamilyL9 N-domain-like8070579 3000338 SCOP2B (2022-06-29)
GA [auth BT]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8089132 3000334 SCOP2B (2022-06-29)
QA [auth Be]SCOP2B SuperfamilyMitochondrial ribosomal protein L27-like8096622 3002240 SCOP2B (2022-06-29)
RB [auth AK]SCOP2B SuperfamilyTranslational machinery components8096616 3000571 SCOP2B (2022-06-29)
YB [auth AU]SCOP2 FamilyRibosomal protein S218083455 4006173 SCOP2 (2022-06-29)
YB [auth AU]SCOP2 SuperfamilyRibosomal protein S218083456 3002159 SCOP2 (2022-06-29)
CC [auth Aa]SCOP2B SuperfamilyMitochondrial 28S ribosomal protein S22-like8096620 3002074 SCOP2B (2022-06-29)
P [auth B9]SCOP2 FamilyRibosomal protein L368083321 4003715 SCOP2 (2022-06-29)
P [auth B9]SCOP2 SuperfamilyRibosomal protein L368083322 3001346 SCOP2 (2022-06-29)
AA [auth BN]SCOP2 FamilyRibosomal protein L138098009 4003623 SCOP2 (2022-06-29)
AA [auth BN]SCOP2 SuperfamilyRibosomal protein L138098010 3001134 SCOP2 (2022-06-29)
BA [auth BO]SCOP2B Superfamily50S Ribosomal protein L14-like8072068 3000433 SCOP2B (2022-06-29)
CA [auth BP]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8089120 3001045 SCOP2B (2022-06-29)
DA [auth BQ]SCOP2B SuperfamilyRibosomal protein L16p/L10e8076055 3000884 SCOP2B (2022-06-29)
IA [auth BV]SCOP2B Superfamilyl21p-like8082451 3002005 SCOP2B (2022-06-29)
LA [auth BY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082519 3000334 SCOP2B (2022-06-29)
KB [auth AB]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063848 3001397 SCOP2B (2022-06-29)
SB [auth AL]SCOP2B SuperfamilyNucleic acid-binding proteins8096284 3000135 SCOP2B (2022-06-29)
TB [auth AN]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052589 3000068 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth B1]Ribosomal_L28_1e6gawB11 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Mitoribosomal protein bL28mF: Ribosomal_L28_1ECOD (1.6)
I [auth B2]MRP-L47e6gawB21 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: MRP-L47ECOD (1.6)
J [auth B3]Ribosomal_L30e6gawB31 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
K [auth B4]Mitoc_L55e6gawB41 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Mitoc_L55ECOD (1.6)
M [auth B6]Ribosomal_L33e6gawB61 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
N [auth B7]Ribosomal_L34e6gawB71 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
O [auth B8]Ribosomal_L35pe6gawB81 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
S [auth BC]GTP_EFTU_D2_3e6gawBC3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_3ECOD (1.6)
S [auth BC]GTP_EFTU_D2e6gawBC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2ECOD (1.6)
S [auth BC]MnmE_helical_2nde6gawBC2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
S [auth BC]IF-2e6gawBC4 A: a/b three-layered sandwichesX: Initiation factor IF2/eIF5b, domain 3 (From Topology)H: Initiation factor IF2/eIF5b, domain 3 (From Topology)T: Initiation factor IF2/eIF5b, domain 3F: IF-2ECOD (1.6)
T [auth BD]Ribosomal_L2e6gawBD2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2ECOD (1.6)
T [auth BD]Ribosomal_L2_Ce6gawBD1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
W [auth BI]Ribosomal_L9_N_1e6gawBI1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_N_1ECOD (1.6)
Y [auth BK]Ribosomal_L11e6gawBK2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
Y [auth BK]Ribosomal_L11_Ne6gawBK1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
FA [auth BS]Ribosomal_L18pe6gawBS1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
GA [auth BT]Ribosomal_L19e6gawBT1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
HA [auth BU]Ribosomal_L20e6gawBU1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
JA [auth BW]Ribosomal_L22e6gawBW1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
KA [auth BX]Ribosomal_L23_2e6gawBX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
QA [auth Be]MRP-L27e6gawBe1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: MRP-L27ECOD (1.6)
UA [auth Bi]Tim44e6gawBi1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: Tim44ECOD (1.6)
VA [auth Bj]MRP-L46e6gawBj1 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: MRP-L46ECOD (1.6)
WA [auth Bk]Ribosomal_S10_2e6gawBk1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_2ECOD (1.6)
YA [auth Bm]Ribosomal_L50e6gawBm1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: Ribosomal_L50ECOD (1.6)
AB [auth Bo]EUF08791e6gawBo1 A: extended segmentsX: Mitoribosomal protein mL52 (From Topology)H: Mitoribosomal protein mL52 (From Topology)T: Mitoribosomal protein mL52F: EUF08791ECOD (1.6)
DB [auth Bt]MRP-63e6gawBt1 A: extended segmentsX: Mitoribosomal protein mL63 (From Topology)H: Mitoribosomal protein mL63 (From Topology)T: Mitoribosomal protein mL63F: MRP-63ECOD (1.6)
NB [auth AF]Ribosomal_S6_1e6gawAF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6_1ECOD (1.6)
RB [auth AK]Ribosomal_S11e6gawAK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
VB [auth AP]Ribosomal_S16e6gawAP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
XB [auth AR]Ribosomal_S18e6gawAR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
YB [auth AU]Ribosomal_S21_2e6gawAU1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21_2ECOD (1.6)
CC [auth Aa]MRP-S22e6gawAa1 A: a+b complex topologyX: Mitoribosomal protein mS22 (From Topology)H: Mitoribosomal protein mS22 (From Topology)T: Mitoribosomal protein mS22F: MRP-S22ECOD (1.6)
EC [auth Ac]L51_S25_CI-B8e6gawAc1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
FC [auth Ad]MRP-S26e6gawAd1 A: extended segmentsX: Mitoribosomal protein mS26 (From Topology)H: Mitoribosomal protein mS26 (From Topology)T: Mitoribosomal protein mS26F: MRP-S26ECOD (1.6)
IC [auth Ag]DAP3_Ce6gawAg1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: DAP3_CECOD (1.6)
IC [auth Ag]DAP3_Ne6gawAg2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DAP3_NECOD (1.6)
JC [auth Ah]MRP-S31e6gawAh1 A: extended segmentsX: Mitoribosomal protein mS31 (From Topology)H: Mitoribosomal protein mS31 (From Topology)T: Mitoribosomal protein mS31F: MRP-S31ECOD (1.6)
KC [auth Ai]MRP-S33e6gawAi1 A: extended segmentsX: Mitoribosomal protein mS33 (From Topology)H: Mitoribosomal protein mS33 (From Topology)T: Mitoribosomal protein mS33F: MRP-S33ECOD (1.6)
LC [auth Aj]MRP-S34e6gawAj1 A: beta barrelsX: SH3H: Mitoribosomal protein mS34 (From Topology)T: Mitoribosomal protein mS34F: MRP-S34ECOD (1.6)
NC [auth Am]KOG4695e6gawAm1 A: few secondary structure elementsX: p8-MTCP1-related (From Topology)H: p8-MTCP1-related (From Topology)T: p8-MTCP1-relatedF: KOG4695ECOD (1.6)
C [auth EL]Ribosomal_L12_N_1e6gawEL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
D [auth FL]Ribosomal_L12_N_1e6gawFL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
E [auth GL]Ribosomal_L12_N_1e6gawGL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
F [auth HL]Ribosomal_L12_N_1e6gawHL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
Z [auth BL]Ribosomal_L12e6gawBL1 A: a+b two layersX: ClpS-likeH: ClpS-related (From Topology)T: ClpS-relatedF: Ribosomal_L12ECOD (1.6)
A [auth CL]Ribosomal_L12_N_1e6gawCL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
B [auth DL]Ribosomal_L12_N_1e6gawDL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
P [auth B9]Ribosomal_L36e6gawB91 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
U [auth BE]Ribosomal_L3e6gawBE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
V [auth BF]Ribosomal_L4e6gawBF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
G [auth B0]Ribosomal_L27e6gawB01 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
AA [auth BN]Ribosomal_L13e6gawBN1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
BA [auth BO]Ribosomal_L14e6gawBO1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
CA [auth BP]Ribosomal_L27Ae6gawBP1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
DA [auth BQ]Ribosomal_L16e6gawBQ1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
EA [auth BR]Ribosomal_L17e6gawBR1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17ECOD (1.6)
IA [auth BV]Ribosomal_L21pe6gawBV1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
LA [auth BY]ribosomal_L24_1e6gawBY1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
MA [auth Ba]PDCD9e6gawBa1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
NA [auth Bb]PBPe6gawBb1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: PEBP-likeF: PBPECOD (1.6)
OA [auth Bc]TGSe6gawBc2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: TGSECOD (1.6)
OA [auth Bc]tRNA_SADe6gawBc1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: tRNA_SADECOD (1.6)
PA [auth Bd]MRP-L28e6gawBd1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L28 (From Topology)H: Mitochondrial 54S ribosomal protein L28 (From Topology)T: Mitochondrial 54S ribosomal protein L28F: MRP-L28ECOD (1.6)
RA [auth Bf]MRP-S32e6gawBf1 A: extended segmentsX: Mitoribosomal protein mL42 (From Topology)H: Mitoribosomal protein mL42 (From Topology)T: Mitoribosomal protein mL42F: MRP-S32ECOD (1.6)
SA [auth Bg]L51_S25_CI-B8e6gawBg1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
TA [auth Bh]Ribonucleas_3_3e6gawBh1 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: Ribonucleas_3_3ECOD (1.6)
TA [auth Bh]dsrme6gawBh2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: dsrmECOD (1.6)
XA [auth Bl]Img2e6gawBl1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: Img2ECOD (1.6)
ZA [auth Bn]MRP-L51e6gawBn1 A: alpha bundlesX: Long alpha-hairpinH: Mitoribosomal protein mL51 (From Topology)T: Mitoribosomal protein mL51F: MRP-L51ECOD (1.6)
BB [auth Bp]MRP_L53e6gawBp1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: MRP_L53ECOD (1.6)
EB [auth Bu]RF-1_Ne6gawBu1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: RF-1_NECOD (1.6)
FB [auth Bv]CR6_interacte6gawBv1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L25 (From Topology)H: Mitochondrial 54S ribosomal protein L25 (From Topology)T: Mitochondrial 54S ribosomal protein L25F: CR6_interactECOD (1.6)
GB [auth Bw]PDCD9e6gawBw1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
HB [auth Bx]Ribosomal_S18e6gawBx1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
KB [auth AB]Ribosomal_S2_1e6gawAB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_1ECOD (1.6)
LB [auth AC]MRP-S24e6gawAC1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: MRP-S24ECOD (1.6)
MB [auth AE]Ribosomal_S5_Ce6gawAE3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
MB [auth AE]Ribosomal_S5_1e6gawAE2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_1ECOD (1.6)
MB [auth AE]KOG2646e6gawAE1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: KOG2646ECOD (1.6)
OB [auth AG]Ribosomal_S7e6gawAG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7ECOD (1.6)
PB [auth AI]Ribosomal_S9e6gawAI1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
QB [auth AJ]Ribosomal_S10_2e6gawAJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_2ECOD (1.6)
SB [auth AL]Ribosom_S12_S23e6gawAL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
TB [auth AN]Ribosomal_S14_1e6gawAN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
UB [auth AO]Ribosomal_S15_1e6gawAO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
WB [auth AQ]Ribosomal_S17_1e6gawAQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
L [auth B5]KOG4080e6gawB51 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: KOG4080ECOD (1.6)
DC [auth Ab]MRP-S23e6gawAb1 A: alpha arraysX: RuvA-CH: Mitoribosomal protein mS23 (From Topology)T: Mitoribosomal protein mS23F: MRP-S23ECOD (1.6)
GC [auth Ae]H2O2_YaaD,MRP-S27e6gawAe1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: H2O2_YaaD,MRP-S27ECOD (1.6)
HC [auth Af]MRP-S35e6gawAf1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: MRP-S35ECOD (1.6)
MC [auth Ak]UNK_F_TYPEe6gawAk1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: UNK_F_TYPEECOD (1.6)
OC [auth An]DUF1713e6gawAn1 A: extended segmentsX: Mitoribosomal protein mS38 (From Topology)H: Mitoribosomal protein mS38 (From Topology)T: Mitoribosomal protein mS38F: DUF1713ECOD (1.6)
QC [auth Ap]Ribosomal_S18e6gawAp1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H [auth B1]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
I [auth B2]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
J [auth B3]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
K [auth B4]PF09776Mitochondrial ribosomal protein L55 (Mitoc_L55)Mitochondrial ribosomal protein L55- Family
M [auth B6]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
N [auth B7]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
S [auth BC]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
S [auth BC]PF11987Translation-initiation factor 2 (IF-2)Translation-initiation factor 2IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 pr ...IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 promotes the binding of the initiator tRNA to the A site in the smaller ribosomal subunit and catalyses the hydrolysis of GTP following initiation-complex formation [2].
Domain
T [auth BD]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
W [auth BI]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
X [auth BJ]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
Y [auth BK]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
FA [auth BS]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
GA [auth BT]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
HA [auth BU]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
JA [auth BW]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
KA [auth BX]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
QA [auth Be]PF09809Mitochondrial ribosomal protein L27 (MRP-L27)Mitochondrial ribosomal protein L27- Family
UA [auth Bi]PF04280Tim44-like domain (Tim44)Tim44-like domainTim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ...Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [1]. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane [3].
Domain
VA [auth Bj]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
WA [auth Bk]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
YA [auth Bm]PF10501Ribosomal subunit 39S (Ribosomal_L50)Ribosomal subunit 39SThe 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ...The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absence of the enzyme pseudouridine synthase (RluD) synthase, there is an accumulation of 50S and 30S subunits and the appearance of abnormal particles (62S and 39S), with concomitant loss of 70S ribosomes [2].
Domain
AB [auth Bo]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
DB [auth Bt]PF14978Mitochondrial ribosome protein 63 (MRP-63)Mitochondrial ribosome protein 63- Family
NB [auth AF]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
RB [auth AK]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
XB [auth AR]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
YB [auth AU]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
CC [auth Aa]PF10245Mitochondrial 28S ribosomal protein S22 (MRP-S22)Mitochondrial 28S ribosomal protein S22- Family
EC [auth Ac]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
IC [auth Ag]PF10236Mitochondrial ribosomal death-associated protein 3 (DAP3)Mitochondrial ribosomal death-associated protein 3- Family
KC [auth Ai]PF08293Mitochondrial ribosomal subunit S27 (MRP-S33)Mitochondrial ribosomal subunit S27- Family
NC [auth Am]PF06747CHCH domain (CHCH)CHCH domainwe have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extende ...we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11-kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation [2]. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit [3]. The CHCH domain was previously called DUF657 [4].
Domain
PC [auth Ao]PF13812Pentatricopeptide repeat domain (PPR_3)Pentatricopeptide repeat domain- Repeat
PF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].Domain
PF00542Ribosomal protein L7/L12 C-terminal domain (Ribosomal_L12)Ribosomal protein L7/L12 C-terminal domain- Domain
P [auth B9]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
U [auth BE]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
V [auth BF]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
G [auth B0]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
AA [auth BN]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
BA [auth BO]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
CA [auth BP]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
DA [auth BQ]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
EA [auth BR]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
IA [auth BV]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
LA [auth BY]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
LA [auth BY]PF00467KOW motif (KOW)KOW motif- Family
MA [auth Ba]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
NA [auth Bb]PF01161Phosphatidylethanolamine-binding protein (PBP)Phosphatidylethanolamine-binding protein- Domain
PA [auth Bd]PF09812Mitochondrial ribosomal protein L28 (MRP-L28)Mitochondrial ribosomal protein L28- Family
RA [auth Bf]PF10210Mitochondrial 28S ribosomal protein S32 (MRP-S32)Mitochondrial 28S ribosomal protein S32- Family
SA [auth Bg]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
XA [auth Bl]PF05046Mitochondrial large subunit ribosomal protein (Img2) (Img2)Mitochondrial large subunit ribosomal protein (Img2)This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1].Domain
ZA [auth Bn]PF10244Mitochondrial ribosomal subunit (MRP-L51)Mitochondrial ribosomal subunit- Family
CB [auth Bq]PF08561Mitochondrial ribosomal protein L37 (Ribosomal_L37)Mitochondrial ribosomal protein L37- Family
EB [auth Bu]PF00472RF-1 domain (RF-1)RF-1 domain- Family
FB [auth Bv]PF10147Growth arrest and DNA-damage-inducible proteins-interacting protein 1 (CR6_interact)Growth arrest and DNA-damage-inducible proteins-interacting protein 1- Family
HB [auth Bx]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
KB [auth AB]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
LB [auth AC]PF14955Mitochondrial ribosome subunit S24 (MRP-S24)Mitochondrial ribosome subunit S24- Family
MB [auth AE]PF2125140S ribosomal protein rpS2 (S5p), N-terminal (S5p_N)40S ribosomal protein rpS2 (S5p), N-terminalThis entry represents an extension found at the N-terminal of mammalian 28S ribosomal protein S5 [1,2]. This lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the mRNA channel entrance [2].Domain
MB [auth AE]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
MB [auth AE]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
OB [auth AG]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
PB [auth AI]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
QB [auth AJ]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
SB [auth AL]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
TB [auth AN]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
WB [auth AQ]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
L [auth B5]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
DC [auth Ab]PF10484Mitochondrial ribosomal protein S23 (MRP-S23)Mitochondrial ribosomal protein S23- Family
HC [auth Af]PF10246Mitochondrial ribosomal protein MRP-S35 (MRP-S35)Mitochondrial ribosomal protein MRP-S35- Family
MC [auth Ak]PF10213Mitochondrial ribosomal subunit protein (MRP-S28)Mitochondrial ribosomal subunit protein- Family
OC [auth An]PF08213Mitochondrial mRNA-processing protein COX24, C-terminal (COX24_C)Mitochondrial mRNA-processing protein COX24, C-terminalThis domain of unknown function is found at the C terminal end of Mitochondrial small ribosomal subunit protein mS38, also known as Mitochondrial mRNA-processing protein COX24 in yeast which is involved in the splicing of the COX1 mRNA [1]. COX24 is ...This domain of unknown function is found at the C terminal end of Mitochondrial small ribosomal subunit protein mS38, also known as Mitochondrial mRNA-processing protein COX24 in yeast which is involved in the splicing of the COX1 mRNA [1]. COX24 is a component of the mitochondrial ribosome (mitoribosome), responsible for the synthesis of mitochondrial genome-encoded proteins, including at least some of the essential transmembrane subunits of the mitochondrial respiratory chain. The mitoribosomes are attached to the mitochondrial inner membrane and translation products are cotranslationally integrated into the membrane [2,3]. This domain is also found in COX24 mammalian homologue Aurora kinase A-interacting protein [4]. This entry also includes uncharacterised proteins from bacteria.
Domain
QC [auth Ap]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth B1]Mitochondrial ribosomal protein L28 -
I [auth B2]Mitochondrial ribosomal protein L47
J [auth B3]uL30m
K [auth B4]39S ribosomal protein L55, mitochondrial -
M [auth B6]bL33m
N [auth B7]Mitochondrial ribosomal protein L34
O [auth B8]Mitochondrial ribosomal protein L35- -
Q [auth BA]16S ribosomal RNA, mitochondrial---
S [auth BC]Translation initiation factor IF-2, mitochondrial
T [auth BD]39S ribosomal protein L2, mitochondrial
W [auth BI]Mitochondrial ribosomal protein L9
X [auth BJ]Mitochondrial ribosomal protein L10- -
Y [auth BK]Mitochondrial ribosomal protein L11
FA [auth BS]Mitochondrial ribosomal protein L18
GA [auth BT]Mitochondrial ribosomal protein L19
HA [auth BU]Mitochondrial ribosomal protein L20
JA [auth BW]uL22m
KA [auth BX]uL23m---
QA [auth Be]Mitochondrial ribosomal protein L41
UA [auth Bi]mL45- -
VA [auth Bj]Mitochondrial ribosomal protein L46 -
WA [auth Bk]Mitochondrial ribosomal protein L48- -
YA [auth Bm]mL50- -
AB [auth Bo]39S ribosomal protein L52, mitochondrial
DB [auth Bt]Mitochondrial ribosomal protein L57
JB [auth AA]12S ribosomal RNA, mitochondrial---
NB [auth AF]Mitochondrial ribosomal protein S6---
RB [auth AK]28S ribosomal protein S11, mitochondrial
VB [auth AP]bS16m---
XB [auth AR]Mitochondrial ribosomal protein S18C
YB [auth AU]bS21m
AC [auth AX]MT-CO3 mRNA, mitochondrial---
CC [auth Aa]Mitochondrial ribosomal protein S22 -
EC [auth Ac]Mitochondrial ribosomal protein S25 -
FC [auth Ad]Mitochondrial ribosomal protein S26 -
IC [auth Ag]Death associated protein 3-
JC [auth Ah]mS31---
KC [auth Ai]mS33- -
LC [auth Aj]28S ribosomal protein S34, mitochondrial---
NC [auth Am]Coiled-coil-helix-coiled-coil-helix domain-containing protein 1-
PC [auth Ao]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
Mitochondrial ribosomal protein L12
P [auth B9]Ribosomal protein
R [auth BB]tRNA-Phe, mitochondrial---
U [auth BE]ICT1
V [auth BF]Mitochondrial ribosomal protein L4
G [auth B0]Mitochondrial ribosomal protein L27
AA [auth BN]39S ribosomal protein L13, mitochondrial
BA [auth BO]uL14m
CA [auth BP]39S ribosomal protein L15, mitochondrial---
DA [auth BQ]39S ribosomal protein L16, mitochondrial
EA [auth BR]39S ribosomal protein L17, mitochondrial
IA [auth BV]Mitochondrial ribosomal protein L21
LA [auth BY]39S ribosomal protein L24, mitochondrial
MA [auth Ba]Mitochondrial ribosomal protein L37
NA [auth Bb]Mitochondrial ribosomal protein L38- -
OA [auth Bc]Mitochondrial ribosomal protein L39 - -
PA [auth Bd]39S ribosomal protein L40, mitochondrial isoform 1- -
RA [auth Bf]mL42- -
SA [auth Bg]mL43
TA [auth Bh]39S ribosomal protein L44, mitochondrial
XA [auth Bl]39S ribosomal protein L49, mitochondrial
ZA [auth Bn]Mitochondrial ribosomal protein L51
BB [auth Bp]mL53---
CB [auth Bq]mL54 -
EB [auth Bu]Peptidyl-tRNA hydrolase ICT1, mitochondrial
FB [auth Bv]mL64-
GB [auth Bw]mL65---
HB [auth Bx]Mitochondrial ribosomal protein S18A
IB [auth Bz]unassigned secondary structure elements---
KB [auth AB]Mitochondrial ribosomal protein S2
LB [auth AC]Mitochondrial ribosomal protein S24- -
MB [auth AE]Mitochondrial ribosomal protein S5
OB [auth AG]Mitochondrial ribosomal protein S7
PB [auth AI]28S ribosomal protein S9, mitochondrial
QB [auth AJ]Mitochondrial ribosomal protein S10- -
SB [auth AL]Mitochondrial ribosomal protein S12
TB [auth AN]Mitochondrial ribosomal protein S14
UB [auth AO]Uncharacterized protein
WB [auth AQ]uS17m
L [auth B5]bL32m
ZB [auth AV]P-site fMet-tRNAMet, mitochondrial---
BC [auth AZ]unassigned secondary structure elements---
DC [auth Ab]28S ribosomal protein S23, mitochondrial
GC [auth Ae]mS27---
HC [auth Af]28S ribosomal protein S28, mitochondrial-
MC [auth Ak]28S ribosomal protein S35, mitochondrial
OC [auth An]Aurora kinase A interacting protein 1-
QC [auth Ap]28S ribosomal protein S18b, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth B1]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
H [auth B1]IPR026569Large ribosomal subunit protein bL28Family
H [auth B1]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
I [auth B2]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
I [auth B2]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
J [auth B3]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
J [auth B3]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
J [auth B3]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
K [auth B4]IPR044884Large ribosomal subunit protein mL55 superfamilyHomologous Superfamily
K [auth B4]IPR018615Large ribosomal subunit protein mL55Family
M [auth B6]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
M [auth B6]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
M [auth B6]IPR001705Large ribosomal subunit protein bL33Family
N [auth B7]IPR000271Large ribosomal subunit protein bL34Family
O [auth B8]IPR019338Large ribosomal subunit protein bL35mFamily
S [auth BC]IPR000178Translation initiation factor IF-2, bacterial-likeFamily
S [auth BC]IPR000795Translational (tr)-type GTP-binding domainDomain
S [auth BC]IPR044145Translation initiation factor IF-2, domain IIDomain
S [auth BC]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
S [auth BC]IPR005225Small GTP-binding protein domainDomain
S [auth BC]IPR015760Translation initiation factor IF- 2Family
S [auth BC]IPR036925Translation initiation factor IF-2, domain 3 superfamilyHomologous Superfamily
S [auth BC]IPR023115Translation initiation factor IF- 2, domain 3Domain
S [auth BC]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
T [auth BD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth BD]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth BD]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
T [auth BD]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth BD]IPR002171Large ribosomal subunit protein uL2Family
W [auth BI]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
W [auth BI]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
W [auth BI]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
W [auth BI]IPR000244Large ribosomal subunit protein bL9Family
X [auth BJ]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
X [auth BJ]IPR001790Large ribosomal subunit protein uL10Family
X [auth BJ]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
Y [auth BK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
Y [auth BK]IPR000911Ribosomal protein uL11Family
Y [auth BK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
Y [auth BK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
FA [auth BS]IPR005484Large ribosomal subunit protein uL18Family
FA [auth BS]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
GA [auth BT]IPR001857Large ribosomal subunit protein bL19Family
GA [auth BT]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
GA [auth BT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HA [auth BU]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
HA [auth BU]IPR005813Large ribosomal subunit protein bL20Family
JA [auth BW]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
JA [auth BW]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
JA [auth BW]IPR001063Large ribosomal subunit protein uL22Family
QA [auth Be]IPR019189Large ribosomal subunit protein mL41Family
UA [auth Bi]IPR032710NTF2-like domain superfamilyHomologous Superfamily
UA [auth Bi]IPR007379Tim44-like domainDomain
VA [auth Bj]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
VA [auth Bj]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
VA [auth Bj]IPR040008Large ribosomal subunit protein mL46Family
VA [auth Bj]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
WA [auth Bk]IPR027486Small ribosomal subunit protein uS10 domainDomain
WA [auth Bk]IPR027487Large ribosomal subunit protein mL48Family
WA [auth Bk]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
YA [auth Bm]IPR018305Large ribosomal subunit protein mL50Family
AB [auth Bo]IPR034596Large ribosomal subunit protein mL52Family
DB [auth Bt]IPR016576Large ribosomal subunit protein mL63Family
RB [auth AK]IPR001971Small ribosomal subunit protein uS11Family
RB [auth AK]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
RB [auth AK]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
XB [auth AR]IPR001648Small ribosomal subunit protein bS18Family
XB [auth AR]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
XB [auth AR]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
YB [auth AU]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
YB [auth AU]IPR001911Small ribosomal subunit protein bS21Family
CC [auth Aa]IPR019374Small ribosomal subunit protein mS22Family
EC [auth Ac]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
EC [auth Ac]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
EC [auth Ac]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
FC [auth Ad]IPR002012Gonadotropin-releasing hormoneConserved Site
FC [auth Ad]IPR019792GonadoliberinFamily
IC [auth Ag]IPR008092Small ribosomal subunit protein mS29, metazoan-typeFamily
IC [auth Ag]IPR019368Small ribosomal subunit protein mS29Family
IC [auth Ag]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
KC [auth Ai]IPR013219Small ribosomal subunit protein mS33Family
NC [auth Am]IPR010625CHCHDomain
NC [auth Am]IPR009069Cysteine alpha-hairpin motif superfamilyHomologous Superfamily
NC [auth Am]IPR033620Small ribosomal subunit protein mS37, metazoanFamily
PC [auth Ao]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
PC [auth Ao]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
PC [auth Ao]IPR002885Pentatricopeptide repeatRepeat
IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
IPR000206Large ribosomal subunit protein bL12Family
P [auth B9]IPR000473Large ribosomal subunit protein bL36Family
P [auth B9]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
U [auth BE]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
U [auth BE]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
U [auth BE]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
U [auth BE]IPR000597Large ribosomal subunit protein uL3Family
V [auth BF]IPR013005Large ribosomal subunit protein uL4-likeFamily
V [auth BF]IPR002136Large ribosomal subunit protein uL4Family
V [auth BF]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
G [auth B0]IPR001684Large ribosomal subunit protein bL27Family
AA [auth BN]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
AA [auth BN]IPR005822Large ribosomal subunit protein uL13Family
AA [auth BN]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
AA [auth BN]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
BA [auth BO]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
BA [auth BO]IPR000218Large ribosomal subunit protein uL14Family
DA [auth BQ]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
DA [auth BQ]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
DA [auth BQ]IPR016180Large ribosomal subunit protein uL16 domainDomain
DA [auth BQ]IPR047873Large ribosomal subunit protein uL16Family
EA [auth BR]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
EA [auth BR]IPR000456Large ribosomal subunit protein bL17Family
IA [auth BV]IPR028909Large ribosomal subunit protein bL21-likeFamily
IA [auth BV]IPR001787Large ribosomal subunit protein bL21Family
IA [auth BV]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
LA [auth BY]IPR003256Large ribosomal subunit protein uL24Family
LA [auth BY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
LA [auth BY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LA [auth BY]IPR005824KOWDomain
LA [auth BY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth BY]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
MA [auth Ba]IPR010793Large ribosomal subunit protein mL37/mL65Family
NA [auth Bb]IPR036610PEBP-like superfamilyHomologous Superfamily
NA [auth Bb]IPR008914Phosphatidylethanolamine-binding proteinFamily
NA [auth Bb]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
OA [auth Bc]IPR012676TGS-likeHomologous Superfamily
OA [auth Bc]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
OA [auth Bc]IPR004095TGSDomain
OA [auth Bc]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
PA [auth Bd]IPR019192Large ribosomal subunit protein mL40Family
PA [auth Bd]IPR039145Large ribosomal subunit protein mL40, metazoa/plantsFamily
RA [auth Bf]IPR019346Large ribosomal subunit protein mL42Family
SA [auth Bg]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
SA [auth Bg]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
SA [auth Bg]IPR039927Large ribosomal subunit protein mL43Family
TA [auth Bh]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
TA [auth Bh]IPR014720Double-stranded RNA-binding domainDomain
TA [auth Bh]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
XA [auth Bl]IPR007740Large ribosomal subunit protein mL49Family
ZA [auth Bn]IPR019373Large ribosomal subunit protein mL51Family
CB [auth Bq]IPR013870Large ribosomal subunit protein mL54Family
EB [auth Bu]IPR000352Peptide chain release factor class IDomain
FB [auth Bv]IPR018472Large ribosomal subunit protein mL64Family
FB [auth Bv]IPR043035Large ribosomal subunit protein mL64 domain superfamilyHomologous Superfamily
HB [auth Bx]IPR001648Small ribosomal subunit protein bS18Family
HB [auth Bx]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
KB [auth AB]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
KB [auth AB]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
KB [auth AB]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
KB [auth AB]IPR001865Small ribosomal subunit protein uS2Family
LB [auth AC]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
MB [auth AE]IPR000851Small ribosomal subunit protein uS5Family
MB [auth AE]IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
MB [auth AE]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
MB [auth AE]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
MB [auth AE]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
MB [auth AE]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
MB [auth AE]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
OB [auth AG]IPR000235Small ribosomal subunit protein uS7Family
OB [auth AG]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
OB [auth AG]IPR023798Small ribosomal subunit protein uS7 domainDomain
PB [auth AI]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
PB [auth AI]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
PB [auth AI]IPR000754Small ribosomal subunit protein uS9Family
PB [auth AI]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
QB [auth AJ]IPR027486Small ribosomal subunit protein uS10 domainDomain
QB [auth AJ]IPR040055Small ribosomal subunit protein uS10mFamily
QB [auth AJ]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
SB [auth AL]IPR006032Small ribosomal subunit protein uS12Family
SB [auth AL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
SB [auth AL]IPR005679Ribosomal protein uS12, bacterial-typeFamily
TB [auth AN]IPR001209Small ribosomal subunit protein uS14Family
UB [auth AO]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
UB [auth AO]IPR000589Small ribosomal subunit protein uS15Family
WB [auth AQ]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
WB [auth AQ]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
WB [auth AQ]IPR000266Small ribosomal subunit protein uS17Family
L [auth B5]IPR002677Large ribosomal subunit protein bL32Family
L [auth B5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DC [auth Ab]IPR023611Small ribosomal subunit protein mS23, conserved domainDomain
DC [auth Ab]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
HC [auth Af]IPR019375Small ribosomal subunit protein bS1mFamily
MC [auth Ak]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
MC [auth Ak]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
OC [auth An]IPR013177Ribosomal protein mS38, C-terminalDomain
QC [auth Ap]IPR040054Small ribosomal subunit protein mS40Family
QC [auth Ap]IPR001648Small ribosomal subunit protein bS18Family
QC [auth Ap]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation