Annotations: 6G2N

Crystal structure of human cytosolic 5'(3')-deoxyribonucleotidase in complex with the inhibitor PB-PAU

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6g2na_	Alpha and beta proteins (a/b)	HAD-like	HAD-like	5'(3')-deoxyribonucleotidase (dNT-2)	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d6g2nb_	Alpha and beta proteins (a/b)	HAD-like	HAD-like	5'(3')-deoxyribonucleotidase (dNT-2)	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	HAD-like	8088995	3001890	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	HAD-like	8088995	3001890	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Histone,Histone_H2A_C	e6g2nA1	A: alpha arrays	X: Major facilitator superfamily (MFS) general substrate transporter	H: Major facilitator superfamily (MFS) general substrate transporter	T: Major facilitator superfamily (MFS) general substrate transporter	F: Histone,Histone_H2A_C	ECOD (v295)
B	Anoctamin	e6g2nB1	A: alpha arrays	X: Surp module (SWAP domain)	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
A	1.10.40.40	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase Protein R1	domain 1	CATH (4.3.0)
B	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
B	1.10.40.40	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase Protein R1	domain 1	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	5'(3')-deoxyribonucleotidase, cytosolic type	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding pyrimidine nucleotide binding small molecule binding phosphoric ester hydrolase activity nucleotidase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity 3'-nucleotidase activity 5'-nucleotidase activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding pyrimidine nucleotide binding small molecule binding phosphoric ester hydrolase activity nucleotidase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity 3'-nucleotidase activity 5'-nucleotidase activity cation binding ion binding metal ion binding identical protein binding protein binding	pyrimidine deoxyribonucleotide catabolic process pyrimidine deoxyribonucleoside monophosphate catabolic process catabolic process deoxyribonucleoside monophosphate catabolic process pyrimidine deoxyribonucleotide metabolic process pyrimidine-containing compound catabolic process organophosphate catabolic process carbohydrate derivative metabolic process nucleoside phosphate catabolic process deoxyribose phosphate catabolic process pyrimidine nucleotide metabolic process pyrimidine deoxyribonucleoside monophosphate metabolic process nucleobase-containing compound metabolic process pyrimidine nucleotide catabolic process dUMP catabolic process pyrimidine deoxyribonucleotide catabolic process pyrimidine deoxyribonucleoside monophosphate catabolic process catabolic process deoxyribonucleoside monophosphate catabolic process pyrimidine deoxyribonucleotide metabolic process pyrimidine-containing compound catabolic process organophosphate catabolic process carbohydrate derivative metabolic process nucleoside phosphate catabolic process deoxyribose phosphate catabolic process pyrimidine nucleotide metabolic process pyrimidine deoxyribonucleoside monophosphate metabolic process nucleobase-containing compound metabolic process pyrimidine nucleotide catabolic process dUMP catabolic process nucleobase-containing small molecule metabolic process small molecule metabolic process nucleoside monophosphate metabolic process phosphorus metabolic process nucleotide catabolic process pyrimidine nucleoside monophosphate catabolic process nucleoside phosphate metabolic process pyrimidine nucleoside monophosphate metabolic process carbohydrate derivative catabolic process nucleoside monophosphate catabolic process pyrimidine-containing compound metabolic process 2'-deoxyribonucleotide metabolic process primary metabolic process nucleotide metabolic process dUMP metabolic process nucleobase-containing compound catabolic process organophosphate metabolic process metabolic process cellular process ribose phosphate metabolic process ribonucleotide catabolic process purine ribonucleoside monophosphate catabolic process purine nucleoside monophosphate catabolic process purine ribonucleoside monophosphate metabolic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside monophosphate metabolic process GMP metabolic process ribonucleoside monophosphate catabolic process purine ribonucleotide catabolic process purine nucleotide catabolic process purine-containing compound catabolic process GMP catabolic process purine-containing compound metabolic process purine ribonucleotide metabolic process purine deoxyribonucleoside monophosphate catabolic process dAMP catabolic process dAMP metabolic process purine deoxyribonucleotide catabolic process purine deoxyribonucleoside monophosphate metabolic process purine deoxyribonucleotide metabolic process pyrimidine ribonucleotide catabolic process pyrimidine ribonucleoside monophosphate catabolic process UMP metabolic process pyrimidine ribonucleotide metabolic process pyrimidine ribonucleoside monophosphate metabolic process UMP catabolic process IMP metabolic process IMP catabolic process TMP metabolic process TMP catabolic process dCMP catabolic process dCMP metabolic process dTMP catabolic process dTMP metabolic process dGMP catabolic process dGMP metabolic process dephosphorylation phosphate-containing compound metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cytosol nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR010708	5'(3')-deoxyribonucleotidase	Family
A, B	IPR023214	HAD superfamily	Homologous Superfamily
A, B	IPR036412	HAD-like superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: Q8TCD5	colorectal cancer medulloblastoma colorectal carcinoma primitive neuroectodermal tumor Colorectal Neoplasms systemic sclerosis

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.