6FRH
Crystal structure of Ssp DnaB Mini-Intein variant M86
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6frha1 | All beta proteins | Hedgehog/intein (Hint) domain | Hedgehog/intein (Hint) domain | Intein (protein splicing domain) | automated matches | (Synechocystis sp. PCC 6803 substr. Kazusa ) [TaxId: 1111708 ], (Synechocystis sp. PCC 6803 substr. Kazusa ) [TaxId: 1111708 ], | SCOPe (2.08) |
A | d6frha2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Synechocystis sp. PCC 6803 substr. Kazusa ) [TaxId: 1111708 ], (Synechocystis sp. PCC 6803 substr. Kazusa ) [TaxId: 1111708 ], | SCOPe (2.08) |
B | d6frhb_ | All beta proteins | Hedgehog/intein (Hint) domain | Hedgehog/intein (Hint) domain | Intein (protein splicing domain) | automated matches | (Synechocystis sp. PCC 6803 substr. Kazusa ) [TaxId: 1111708 ], (Synechocystis sp. PCC 6803 substr. Kazusa ) [TaxId: 1111708 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Hedgehog/intein (Hint) domain | 8036392 | 3001979 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF14890 | e6frhA1 | A: beta complex topology | X: Hedgehog/intein (From Homology) | H: Hedgehog/intein | T: Hint | F: PF14890 | ECOD (1.6) |
B | PF14890 | e6frhB1 | A: beta complex topology | X: Hedgehog/intein (From Homology) | H: Hedgehog/intein | T: Hint | F: PF14890 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.170.16.10 | Mainly Beta | Beta Complex | Endonuclease - Pi-scei | Chain A, domain 1 | CATH (4.3.0) |
B | 2.170.16.10 | Mainly Beta | Beta Complex | Endonuclease - Pi-scei | Chain A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14890 | Intein splicing domain (Intein_splicing) | Intein splicing domain | - | Family | |
PF03796 | DnaB-like helicase C terminal domain (DnaB_C) | DnaB-like helicase C terminal domain | The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the q ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036844 | Hint domain superfamily | Homologous Superfamily | |
IPR006142 | Intein | Domain | |
IPR007692 | DNA helicase, DnaB type | Family | |
IPR006141 | Intein N-terminal splicing region | PTM | |
IPR003586 | Hint domain C-terminal | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR016136 | DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal | Homologous Superfamily | |
IPR007693 | DNA helicase, DnaB-like, N-terminal | Domain | |
IPR007694 | DNA helicase, DnaB-like, C-terminal | Domain | |
IPR004042 | Intein DOD homing endonuclease | Domain | |
IPR027434 | Homing endonuclease | Homologous Superfamily | |
IPR004860 | Homing endonuclease, LAGLIDADG | Domain | |
IPR003587 | Hint domain N-terminal | Domain | |
IPR036185 | DNA helicase, DnaB-like, N-terminal domain superfamily | Homologous Superfamily | |
IPR030934 | Intein C-terminal splicing region | Domain |