6FB3 | pdb_00006fb3

Teneurin 2 Partial Extracellular Domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	UNK_F_TYPE	e6fb3B5	A: beta meanders	X: Rearrangement hotspot (RHS) repeats protein (From Topology)	H: Rearrangement hotspot (RHS) repeats protein (From Topology)	T: Rearrangement hotspot (RHS) repeats protein	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e6fb3B4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e6fb3B6	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: UNK_F_TYPE	ECOD (1.6)
B	SGL_2	e6fb3B3	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: SGL_2	ECOD (1.6)
B	UNK_F_TYPE	e6fb3B1	A: a+b two layers	X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e6fb3B2	A: few secondary structure elements	X: His-Me finger endonucleases (From Homology)	H: His-Me finger endonucleases	T: Inactive Tox-GHH domain of teneurin	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6fb3A2	A: beta meanders	X: Rearrangement hotspot (RHS) repeats protein (From Topology)	H: Rearrangement hotspot (RHS) repeats protein (From Topology)	T: Rearrangement hotspot (RHS) repeats protein	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6fb3A3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6fb3A4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: UNK_F_TYPE	ECOD (1.6)
A	SGL_2	e6fb3A1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: SGL_2	ECOD (1.6)
A	UNK_F_TYPE	e6fb3A5	A: a+b two layers	X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6fb3A6	A: few secondary structure elements	X: His-Me finger endonucleases (From Homology)	H: His-Me finger endonucleases	T: Inactive Tox-GHH domain of teneurin	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF25023	Teneurin YD-shell (TEN_YD-shell)	Teneurin YD-shell	-	Repeat
A, B, C, D	PF25021	Teneurin NHL domain (TEN_NHL)	Teneurin NHL domain	-	Repeat
A, B, C, D	PF24329	Teneurin 1-4, FN-plug domain (FN-plug_TEN1-4)	Teneurin 1-4, FN-plug domain	This entry represents the FN-plug domain found near the central region of Teneurins 1 to 4, a group of proteins involved in development and function of the nervous system [1-3]. This domain forms numerous hydrogen-bonding and hydrophobic interactions ...	This entry represents the FN-plug domain found near the central region of Teneurins 1 to 4, a group of proteins involved in development and function of the nervous system [1-3]. This domain forms numerous hydrogen-bonding and hydrophobic interactions with the YD-shell interior [3].	Domain
A, B, C, D	PF23538	Teneurin antibiotic-binding-like domain (Teneurin_ABD)	Teneurin antibiotic-binding-like domain	The Antibiotic-Binding-Like Domain (ABD) is a conserved structural motif identified in the teneurin family of proteins, characterized by its resemblance to bacterial proteins known to bind small-molecule antibiotics such as bleomycin and zorbamycin. ...	The Antibiotic-Binding-Like Domain (ABD) is a conserved structural motif identified in the teneurin family of proteins, characterized by its resemblance to bacterial proteins known to bind small-molecule antibiotics such as bleomycin and zorbamycin. In the crystal structure of chicken Ten2, the ABD comprises approximately 120 residues and is positioned immediately downstream of the shell exit site. Structural homology analyses reveal similarities between the ABD of chicken Ten2 and antibiotic-binding proteins found in bacteria. These bacterial proteins confer resistance to antibiotics by sequestering them, thereby preventing their activation by oxygen. The ABD of teneurins wraps around a long helix that leads into the most C-terminal domain, known as the ToxGHH domain.	Domain
A, B, C, D	PF15636	GHH signature containing HNH/Endo VII superfamily nuclease toxin (Tox-GHH)	GHH signature containing HNH/Endo VII superfamily nuclease toxin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Teneurin-2	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding signaling receptor binding cell adhesion molecule binding protein heterodimerization activity protein dimerization activity identical protein binding protein homodimerization activity	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication filopodium assembly regulation of cellular component organization positive regulation of cellular component organization cell projection organization positive regulation of biological process cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication filopodium assembly regulation of cellular component organization positive regulation of cellular component organization cell projection organization positive regulation of biological process regulation of filopodium assembly plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization cellular component assembly positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of filopodium assembly positive regulation of cellular process plasma membrane bounded cell projection organization positive regulation of cellular component biogenesis regulation of cell projection organization regulation of cell projection assembly regulation of cellular component biogenesis regulation of plasma membrane bounded cell projection assembly cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly cell adhesion cell-cell adhesion negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process developmental process multicellular organismal process cellular developmental process cell development nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation neuron development anatomical structure development system development	cellular anatomical structure cell junction cell periphery postsynapse postsynaptic membrane synapse membrane plasma membrane plasma membrane region synaptic membrane cell-cell junction anchoring junction presynapse presynaptic membrane cellular anatomical structure cell junction cell periphery postsynapse postsynaptic membrane synapse membrane plasma membrane plasma membrane region synaptic membrane cell-cell junction anchoring junction presynapse presynaptic membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection growth cone axon distal axon site of polarized growth membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system neuron spine dendritic spine actin-based cell projection filopodium nucleus endoplasmic reticulum membrane-enclosed lumen intracellular membraneless organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen membraneless organelle PML body nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
A, B, C, D	IPR056822	Teneurin, NHL domain	Domain
A, B, C, D	IPR008969	Carboxypeptidase-like, regulatory domain superfamily	Homologous Superfamily
A, B, C, D	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
A, B, C, D	IPR000742	EGF-like domain	Domain
A, B, C, D	IPR028916	Tox-GHH domain	Domain
A, B, C, D	IPR006530	YD repeat	Repeat
A, B, C, D	IPR022385	Rhs repeat-associated core	Domain
A, B, C, D	IPR057629	Teneurin-1-4-like, galactose-binding domain-like	Domain
A, B, C, D	IPR051216	Teneurin	Family
A, B, C, D	IPR056820	Teneurin, TTR-like domain	Domain
A, B, C, D	IPR001881	EGF-like calcium-binding domain	Domain
A, B, C, D	IPR056823	Teneurin-like, YD-shell	Domain
A, B, C, D	IPR009471	Teneurin intracellular, N-terminal	Domain
A, B, C, D	IPR057627	Teneurin 1-4-like, FN-plug domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.