6EV3

Structure of wild type A. niger Fdc1 that has been illuminated with UV light, with prFMN in the iminium and ketimine form


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AUbiD_2nde6ev3A2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: UbiD_2ndECOD (1.6)
AUbiD_3rde6ev3A1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: UbiD C-terminal domain-like (From Topology)T: UbiD C-terminal domain-likeF: UbiD_3rdECOD (1.6)
AUbiD_1ste6ev3A3 A: a+b two layersX: N-terminal subdomain in UbiD middle domain (From Topology)H: N-terminal subdomain in UbiD middle domain (From Topology)T: N-terminal subdomain in UbiD middle domainF: UbiD_1stECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF206953-octaprenyl-4-hydroxybenzoate carboxy-lyase N-terminal domain (UbiD_N)3-octaprenyl-4-hydroxybenzoate carboxy-lyase N-terminal domainThis family has been characterised as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes [1]. This enzyme catalyses the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+ [1]. This entry repr ...This family has been characterised as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes [1]. This enzyme catalyses the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+ [1]. This entry represents the N-terminal domain.
Domain
PF206963-octaprenyl-4-hydroxybenzoate carboxy-lyase C-terminal domain (UbiD_C)3-octaprenyl-4-hydroxybenzoate carboxy-lyase C-terminal domainThis family has been characterised as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes [1]. This enzyme catalyses the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+ [1]. This entry repr ...This family has been characterised as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes [1]. This enzyme catalyses the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+ [1]. This entry represents the C-terminal domain.
Domain
PF019773-octaprenyl-4-hydroxybenzoate carboxy-lyase Rift-related domain (UbiD)3-octaprenyl-4-hydroxybenzoate carboxy-lyase Rift-related domainThis family has been characterised as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes [1]. This enzyme catalyses the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+ [1]. This entry repr ...This family has been characterised as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes [1]. This enzyme catalyses the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+ [1]. This entry represents the central RIFT-related domain.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ferulic acid decarboxylase 1