6EPH | pdb_00006eph

Structure of the epsilon_1 / zeta_1 antitoxin toxin system from Neisseria gonorrhoeae in complex with UNAM.


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HUNK_F_TYPEe6ephH1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: UNK_F_TYPEECOD (1.6)
HZeta_toxine6ephH2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Zeta_toxinECOD (1.6)
FUNK_F_TYPEe6ephF1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: UNK_F_TYPEECOD (1.6)
FZeta_toxine6ephF2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Zeta_toxinECOD (1.6)
DUNK_F_TYPEe6ephD2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: UNK_F_TYPEECOD (1.6)
DZeta_toxine6ephD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Zeta_toxinECOD (1.6)
BUNK_F_TYPEe6ephB2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: UNK_F_TYPEECOD (1.6)
BZeta_toxine6ephB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Zeta_toxinECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D, F, H
PF18790KfrB Domain (KfrB)KfrB DomainThis is a domain found in polyvalent proteins of conjugative element or often in the neighbourhood of one [2]. The KfrB domain has been speculated to play a role in discrimination of self from non-self in plasmid conjugation systems [2]. This domain ...This is a domain found in polyvalent proteins of conjugative element or often in the neighbourhood of one [2]. The KfrB domain has been speculated to play a role in discrimination of self from non-self in plasmid conjugation systems [2]. This domain has been described as having an OB-fold. Additionally in some proteins it has a four stranded beta sheet elaboration to the N-terminus that packs against the side of the OB barrel that is not included in this entry. The KfrB domain is also found at the C-terminus of some zeta toxin proteins [3].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, D, F, H
IPR040782KfrB domainDomain
B, D, F, H
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily