6EMW | pdb_00006emw

Structure of S.aureus ClpC in complex with MecA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CA [auth c]SCOP2B SuperfamilyRecA-like P-loop NTPases 8082859 3002019 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRecA-like P-loop NTPases 8082859 3002019 SCOP2B (2022-06-29)
OA [auth o]SCOP2B SuperfamilyRecA-like P-loop NTPases 8082859 3002019 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyRecA-like P-loop NTPases 8082859 3002019 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyRecA-like P-loop NTPases 8082859 3002019 SCOP2B (2022-06-29)
ESCOP2 FamilyExtended AAA-ATPase domain 8082858 4000283 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyRecA-like P-loop NTPases 8082859 3002019 SCOP2 (2022-06-29)
EA [auth e]SCOP2B SuperfamilyAdapter protein MecA, substrate binding domain-like 8092887 3002638 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilyAdapter protein MecA, substrate binding domain-like 8092887 3002638 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyAdapter protein MecA, substrate binding domain-like 8092887 3002638 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyAdapter protein MecA, substrate binding domain-like 8092887 3002638 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilyAdapter protein MecA, substrate binding domain-like 8092887 3002638 SCOP2B (2022-06-29)
FA [auth f]SCOP2 FamilyAdapter protein MecA, substrate domain-like 8092886 4007784 SCOP2 (2022-06-29)
FA [auth f]SCOP2 SuperfamilyAdapter protein MecA, substrate binding domain-like 8092887 3002638 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AV-sete6emwA1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
YV-sete6emwY1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
SV-sete6emwS1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
MV-sete6emwM1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
KA [auth k]V-sete6emwk1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
GV-sete6emwG1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
LA [auth l]V-sete6emwl1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
NV-sete6emwN1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
ZV-sete6emwZ1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
TV-sete6emwT1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
HV-sete6emwH1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
BV-sete6emwB1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
IV-sete6emwI1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
UV-sete6emwU1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
OV-sete6emwO1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
MA [auth m]V-sete6emwm1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
CV-sete6emwC1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
AA [auth a]V-sete6emwa1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
BA [auth b]V-sete6emwb1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
DRibosomal_L22e6emwD1 A: alpha arraysX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Ribosomal_L22ECOD (v295)
NA [auth n]V-sete6emwn1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
PV-sete6emwP1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
VV-sete6emwV1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
JV-sete6emwJ1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
CA [auth c]V-sete6emwc1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
KV-sete6emwK1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
OA [auth o]V-sete6emwo1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
WV-sete6emwW1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
QV-sete6emwQ1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
EV-sete6emwE1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
FV-sete6emwF1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
LV-sete6emwL1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
PA [auth p]V-sete6emwp1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
XV-sete6emwX1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
RV-sete6emwR1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
DA [auth d]V-sete6emwd1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
EA [auth e]Ribosomal_L22e6emwe1 A: alpha arraysX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Ribosomal_L22ECOD (v295)
IA [auth i]V-sete6emwi1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
JA [auth j]V-sete6emwj1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
HA [auth h]V-sete6emwh1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
GA [auth g]V-sete6emwg1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)
FA [auth f]V-sete6emwf1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: V-setECOD (v295)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF10431C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)C-terminal, D2-small domain, of ClpB proteinThis is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 ...This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly [1]. The domain is associated with two Clp_N, Pfam:PF02861, at the N-terminus as well as AAA, Pfam:PF00004 and AAA_2, Pfam:PF07724.
Domain
PF07724AAA domain (Cdc48 subfamily) (AAA_2)AAA domain (Cdc48 subfamily)This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model. Domain
PF17871AAA lid domain (AAA_lid_9)AAA lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF17871AAA lid domain (AAA_lid_9)AAA lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ATP-dependent Clp protease ATP-binding subunit -
ATP-dependent Clp protease ATP-binding subunit -
Class III stress response-related ATPase, AAA+ superfamily -
ATP-dependent Clp protease ATP-binding subunit ClpC -
ATP-dependent Clp protease ATP-binding subunit ClpC
ATP-dependent Clp protease ATP-binding subunit ClpC
Adapter protein MecA - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001270ClpA/B familyFamily
IPR018368ClpA/B, conserved site 1Conserved Site
IPR041546ClpA/ClpB, AAA lid domainDomain
IPR004176Clp, repeat (R) N-terminal domainDomain
IPR050130ATP-dependent Clp protease/Chaperone ClpA/ClpBFamily
IPR028299ClpA/B, conserved site 2Conserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR001943UVR domainDomain
IPR019489Clp ATPase, C-terminalDomain
IPR036628Clp, N-terminal domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001270ClpA/B familyFamily
IPR018368ClpA/B, conserved site 1Conserved Site
IPR041546ClpA/ClpB, AAA lid domainDomain
IPR004176Clp, repeat (R) N-terminal domainDomain
IPR050130ATP-dependent Clp protease/Chaperone ClpA/ClpBFamily
IPR028299ClpA/B, conserved site 2Conserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR001943UVR domainDomain
IPR019489Clp ATPase, C-terminalDomain
IPR036628Clp, N-terminal domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001270ClpA/B familyFamily
IPR018368ClpA/B, conserved site 1Conserved Site
IPR041546ClpA/ClpB, AAA lid domainDomain
IPR004176Clp, repeat (R) N-terminal domainDomain
IPR050130ATP-dependent Clp protease/Chaperone ClpA/ClpBFamily
IPR028299ClpA/B, conserved site 2Conserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR001943UVR domainDomain
IPR019489Clp ATPase, C-terminalDomain
IPR036628Clp, N-terminal domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001270ClpA/B familyFamily
IPR018368ClpA/B, conserved site 1Conserved Site
IPR041546ClpA/ClpB, AAA lid domainDomain
IPR004176Clp, repeat (R) N-terminal domainDomain
IPR050130ATP-dependent Clp protease/Chaperone ClpA/ClpBFamily
IPR028299ClpA/B, conserved site 2Conserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR001943UVR domainDomain
IPR019489Clp ATPase, C-terminalDomain
IPR036628Clp, N-terminal domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001270ClpA/B familyFamily
IPR018368ClpA/B, conserved site 1Conserved Site
IPR041546ClpA/ClpB, AAA lid domainDomain
IPR004176Clp, repeat (R) N-terminal domainDomain
IPR050130ATP-dependent Clp protease/Chaperone ClpA/ClpBFamily
IPR028299ClpA/B, conserved site 2Conserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR001943UVR domainDomain
IPR019489Clp ATPase, C-terminalDomain
IPR036628Clp, N-terminal domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001270ClpA/B familyFamily
IPR018368ClpA/B, conserved site 1Conserved Site
IPR041546ClpA/ClpB, AAA lid domainDomain
IPR004176Clp, repeat (R) N-terminal domainDomain
IPR050130ATP-dependent Clp protease/Chaperone ClpA/ClpBFamily
IPR028299ClpA/B, conserved site 2Conserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR001943UVR domainDomain
IPR019489Clp ATPase, C-terminalDomain
IPR036628Clp, N-terminal domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR008681Negative regulator of genetic competence, MecAFamily
IPR038471MecA, C-terminal domain superfamilyHomologous Superfamily