6EML | pdb_00006eml

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth B]SCOP2B SuperfamilyRibosomal protein S7 8065993 3000799 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8103366 3000100 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyS13-like H2TH domain 8098450 3000053 SCOP2B (2022-06-29)
J [auth L]SCOP2 FamilyCold shock DNA-binding domain-like 8063423 4001909 SCOP2 (2022-06-29)
J [auth L]SCOP2 SuperfamilyNucleic acid-binding proteins 8063424 3000135 SCOP2 (2022-06-29)
L [auth P]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8061280 3001397 SCOP2B (2022-06-29)
M [auth Q]SCOP2B SuperfamilyRibosomal S3Ae-like 8053211 3002166 SCOP2B (2022-06-29)
P [auth T]SCOP2B SuperfamilyGS N-terminal domain-like 8053173 3000408 SCOP2B (2022-06-29)
R [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like 8053083 3000433 SCOP2B (2022-06-29)
U [auth Y]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052974 3001284 SCOP2B (2022-06-29)
U [auth Y]SCOP2B SuperfamilyHomeodomain-like 8052973 3000001 SCOP2B (2022-06-29)
V [auth Z]SCOP2B SuperfamilyTranslational machinery components 8095805 3000571 SCOP2B (2022-06-29)
X [auth b]SCOP2B SuperfamilyRibosomal protein S8 8096922 3000709 SCOP2B (2022-06-29)
CA [auth g]SCOP2B SuperfamilyRibosomal protein S30e-like 8053451 3002190 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibosomal protein S19 8086076 3000686 SCOP2B (2022-06-29)
W [auth a]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053136 3000068 SCOP2B (2022-06-29)
T [auth X]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052736 3002138 SCOP2B (2022-06-29)
T [auth X]SCOP2B SuperfamilyNucleic acid-binding proteins 8052738 3000135 SCOP2B (2022-06-29)
B [auth D]SCOP2B SuperfamilyL30e-like 8096946 3001739 SCOP2B (2022-06-29)
O [auth S]SCOP2B SuperfamilyNucleic acid-binding proteins 8052759 3000135 SCOP2B (2022-06-29)
O [auth S]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052760 3000334 SCOP2B (2022-06-29)
O [auth S]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052758 3001473 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth B]e6emlB1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
D [auth C]e6emlC1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
Fe6emlF1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
G [auth H]e6emlH1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
H [auth I]e6emlI1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
J [auth L]e6emlL1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
K [auth N]e6emlN1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
L [auth P]e6emlP1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
M [auth Q]e6emlQ1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
N [auth R]BNR_6, Sortilin-Vps10e6emlR1 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: BNR_6, Sortilin-Vps10ECOD (v294.1)
P [auth T]e6emlT1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
Q [auth U]e6emlU1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
R [auth V]e6emlV1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
S [auth W]e6emlW1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
U [auth Y]e6emlY1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
V [auth Z]e6emlZ1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
X [auth b]e6emlb1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
Y [auth c]e6emlc1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
Z [auth d]e6emld1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
AA [auth f]e6emlf1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
BA [auth t]ABC_membranee6emlt1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ABC_membraneECOD (v294.1)
CA [auth g]e6emlg1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
DA [auth p]e6emlp1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
FA [auth e]e6emle1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
I [auth K]e6emlK1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
Ee6emlE1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
EA [auth r]e6emlr1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
W [auth a]e6emla1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
T [auth X]e6emlX1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
B [auth D]e6emlD1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
O [auth S]e6emlS1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth B]1.10.455.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal protein S7/S5CATH (4.3.0)
F3.30.230.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
J [auth L]2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (4.3.0)
L [auth P]3.40.50.10490 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glucose-6-phosphate isomerase like proteinCATH (4.3.0)
N [auth R]3.30.160.20 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (4.3.0)
N [auth R]3.30.230.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
R [auth V]1.10.168.20 Mainly Alpha Orthogonal Bundle Phosducin domain 2CATH (4.3.0)
U [auth Y]1.10.287.10 Mainly Alpha Orthogonal Bundle Helix Hairpins S15/NS1, RNA-bindingCATH (4.3.0)
V [auth Z]3.30.420.80 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
X [auth b]3.30.1370.30 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1CATH (4.3.0)
X [auth b]3.30.1490.10 Alpha Beta 2-Layer Sandwich Dna Ligase domain 1CATH (4.3.0)
Z [auth d]3.30.70.3370 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
AA [auth f]2.20.25.100 Mainly Beta Single Sheet N-terminal domain of TfIIb Ribosomal protein S27CATH (4.3.0)
I [auth K]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
EA [auth r]3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (utative)
EA [auth r]1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (utative)
W [auth a]3.30.1230.20 Alpha Beta 2-Layer Sandwich Hypothetical Cytosolic Protein Chain: ACATH (4.3.0)
T [auth X]2.40.50.1000 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) CATH (4.3.0)
B [auth D]3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
O [auth S]3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region Chain ACATH (4.3.0)
O [auth S]2.40.50.740 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Ribosomal protein S4, central domainCATH (4.3.0)
O [auth S]2.30.30.30 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth B]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
C [auth B]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
D [auth C]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
G [auth H]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
H [auth I]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
J [auth L]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28eDomain
K [auth N]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
L [auth P]PF17903Krr1 KH1 domain (KH_KRR1_1st)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1]. Domain
L [auth P]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
L [auth P]PF22891Eukaryotic type KH-domain (KH-domain type I) (KH_PNO1_2nd)Eukaryotic type KH-domain (KH-domain type I)This entry represents the second KH domain found in the PNO1 protein. PNO1 is part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. Domain
N [auth R]PF09202Rio2, N-terminal (Rio2_N)Rio2, N-terminalMembers of this family are found in Rio2, and are structurally homologous to the winged helix (wHTH) domain. They adopt a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding ...Members of this family are found in Rio2, and are structurally homologous to the winged helix (wHTH) domain. They adopt a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding properties to the protein, as per other winged helix domains [1].
Domain
N [auth R]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
N [auth R]PF01163RIO domain (RIO1)RIO domainThis is the atypical serine kinase domain found in RIO family of proteins and related sequences, which is conserved in archaea, bacteria and eukaryotes [5,6]. Activity of Rio1 is vital in Saccharomyces cerevisiae for the processing of ribosomal RNA, ...This is the atypical serine kinase domain found in RIO family of proteins and related sequences, which is conserved in archaea, bacteria and eukaryotes [5,6]. Activity of Rio1 is vital in Saccharomyces cerevisiae for the processing of ribosomal RNA, as well as for proper cell cycle progression and chromosome maintenance. The structure of RIO1 has been determined [4]. This domain is also found at the C-terminal of EKC/KEOPS complex subunit BUD32 from Fungi and Kae1/Bud32 from archaea [6].
Domain
N [auth R]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
P [auth T]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
P [auth T]PF22298Tsr1, G-like domain (Tsr1_G-like)Tsr1, G-like domainThis entry represents the G-like (guanine nucleotide-binding domain) domain, found in Tsr1, a protein required for normal export of the pre-40S particles from the nucleus to the cytoplasm during 40S ribosomal subunit synthesis [1-5]. This domain adop ...This entry represents the G-like (guanine nucleotide-binding domain) domain, found in Tsr1, a protein required for normal export of the pre-40S particles from the nucleus to the cytoplasm during 40S ribosomal subunit synthesis [1-5]. This domain adopts a GTPase-like fold, but lacks a P-loop and is not predicted to bind GTP.
Domain
Q [auth U]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
R [auth V]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
S [auth W]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
S [auth W]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
U [auth Y]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
V [auth Z]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
T [auth X]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
T [auth X]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
B [auth D]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
B [auth D]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
O [auth S]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
O [auth S]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
O [auth S]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
O [auth S]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
O [auth S]PF00467KOW motif (KOW)KOW motif- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth B]40S ribosomal protein S5
D [auth C]40S ribosomal protein S17-A
40S ribosomal protein S16-A
G [auth H]40S ribosomal protein S18-A
H [auth I]40S ribosomal protein S19-A
J [auth L]40S ribosomal protein S28-B
K [auth N]Ubiquitin-40S ribosomal protein S31
L [auth P]40S ribosomal protein S0-A
M [auth Q]40S ribosomal protein S1-A
N [auth R]40S ribosomal protein S2
P [auth T]40S ribosomal protein S6-A
Q [auth U]40S ribosomal protein S7-A
R [auth V]40S ribosomal protein S8-A
S [auth W]40S ribosomal protein S9-A
U [auth Y]40S ribosomal protein S13
V [auth Z]40S ribosomal protein S14-A
X [auth b]40S ribosomal protein S22-A
Y [auth c]40S ribosomal protein S23-A
Z [auth d]40S ribosomal protein S24-A
AA [auth f]40S ribosomal protein S27-A
BA [auth t]Ribosome biogenesis protein TSR1
CA [auth g]40S ribosomal protein S30-A
DA [auth p]Pre-rRNA-processing protein PNO1
FA [auth e]Essential nuclear protein 1
I [auth K]40S ribosomal protein S25-A
40S ribosomal protein S15
EA [auth r]Serine/threonine-protein kinase RIO2
W [auth a]40S ribosomal protein S21-A
T [auth X]40S ribosomal protein S11-A
B [auth D]40S ribosomal protein S12
O [auth S]40S ribosomal protein S4-A
A [auth 2]pre-18S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth B]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
C [auth B]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
C [auth B]IPR000235Small ribosomal subunit protein uS7Family
C [auth B]IPR023798Small ribosomal subunit protein uS7 domainDomain
C [auth B]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
D [auth C]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
D [auth C]IPR001210Small ribosomal subunit protein eS17Family
D [auth C]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR000754Small ribosomal subunit protein uS9Family
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
G [auth H]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
G [auth H]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
G [auth H]IPR001892Small ribosomal subunit protein uS13Family
G [auth H]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
H [auth I]IPR001266Small ribosomal subunit protein eS19Family
H [auth I]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
H [auth I]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
H [auth I]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
J [auth L]IPR028626Ribosomal protein eS28 conserved siteConserved Site
J [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth L]IPR000289Small ribosomal subunit protein eS28Family
K [auth N]IPR019954Ubiquitin conserved siteConserved Site
K [auth N]IPR000626Ubiquitin-like domainDomain
K [auth N]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
K [auth N]IPR002906Small ribosomal subunit protein eS31Domain
K [auth N]IPR019956Ubiquitin domainDomain
K [auth N]IPR050158Ubiquitin and ubiquitin-likeFamily
K [auth N]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
K [auth N]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
L [auth P]IPR027498Small ribosomal subunit protein uS2, eukaryotaFamily
L [auth P]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
L [auth P]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
L [auth P]IPR001865Small ribosomal subunit protein uS2Family
L [auth P]IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily
M [auth Q]IPR001593Small ribosomal subunit protein eS1Family
M [auth Q]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
M [auth Q]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
N [auth R]IPR000851Small ribosomal subunit protein uS5Family
N [auth R]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
N [auth R]IPR005711Small ribosomal subunit protein uS5, eukaryota_archaeaFamily
N [auth R]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
N [auth R]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
N [auth R]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
N [auth R]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
P [auth T]IPR014401Small ribosomal subunit protein eS6-likeFamily
P [auth T]IPR001377Small ribosomal subunit protein eS6Family
P [auth T]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
Q [auth U]IPR000554Small ribosomal subunit protein eS7Family
Q [auth U]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
R [auth V]IPR001047Small ribosomal subunit protein eS8Family
R [auth V]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
R [auth V]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
R [auth V]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
S [auth W]IPR002942RNA-binding S4 domainDomain
S [auth W]IPR022801Small ribosomal subunit protein uS4Family
S [auth W]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
S [auth W]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
S [auth W]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
S [auth W]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
U [auth Y]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
U [auth Y]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
U [auth Y]IPR000589Small ribosomal subunit protein uS15Family
U [auth Y]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
V [auth Z]IPR001971Small ribosomal subunit protein uS11Family
V [auth Z]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
V [auth Z]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
X [auth b]IPR000630Small ribosomal subunit protein uS8Family
X [auth b]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
X [auth b]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
Y [auth c]IPR006032Small ribosomal subunit protein uS12Family
Y [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Y [auth c]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
Z [auth d]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
Z [auth d]IPR001976Small ribosomal subunit protein eS24Family
Z [auth d]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth d]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
AA [auth f]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
AA [auth f]IPR000592Small ribosomal subunit protein eS27Family
AA [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth t]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
BA [auth t]IPR030387Bms1/Tsr1-type G domainDomain
BA [auth t]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
BA [auth t]IPR012948AARP2CNDomain
CA [auth g]IPR006846Small ribosomal subunit protein eS30Family
DA [auth p]IPR041174KRR1 small subunit processome component, first KH domainDomain
DA [auth p]IPR055212PNO1, first type I KH domainDomain
DA [auth p]IPR055211PNO1, second type I KH domainDomain
DA [auth p]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
FA [auth e]IPR007955BystinFamily
I [auth K]IPR004977Small ribosomal subunit protein eS25Family
I [auth K]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR002222Small ribosomal subunit protein uS19Family
IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily
EA [auth r]IPR030484Serine/threonine-protein kinase Rio2Domain
EA [auth r]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
EA [auth r]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
EA [auth r]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
EA [auth r]IPR015285RIO2 kinase winged helix domain, N-terminalDomain
EA [auth r]IPR018934RIO-type domainDomain
EA [auth r]IPR000687RIO kinaseDomain
W [auth a]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
W [auth a]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
W [auth a]IPR001931Small ribosomal subunit protein eS21Family
T [auth X]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
T [auth X]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
T [auth X]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth X]IPR000266Small ribosomal subunit protein uS17Family
T [auth X]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
B [auth D]IPR000530Small ribosomal subunit protein eS12Family
B [auth D]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
B [auth D]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
B [auth D]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
O [auth S]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
O [auth S]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
O [auth S]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
O [auth S]IPR002942RNA-binding S4 domainDomain
O [auth S]IPR013845Small ribosomal subunit protein eS4, central regionDomain
O [auth S]IPR000876Small ribosomal subunit protein eS4Family
O [auth S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
O [auth S]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
O [auth S]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
O [auth S]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
O [auth S]IPR005824KOWDomain