Annotations: 6EJF

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
R [auth F]	T2SSE	e6ejfF1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: T2SSE	ECOD (1.6)
Q [auth E]	T2SSE	e6ejfE1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: T2SSE	ECOD (1.6)
P [auth D]	T2SSE	e6ejfD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: T2SSE	ECOD (1.6)
O [auth C]	T2SSE	e6ejfC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: T2SSE	ECOD (1.6)
N [auth B]	T2SSE	e6ejfB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: T2SSE	ECOD (1.6)
M [auth A]	T2SSE	e6ejfA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: T2SSE	ECOD (1.6)
J [auth P]	nfrB	e6ejfP1	A: alpha arrays	X: MshE c-di-GMP-binding domain (From Topology)	H: MshE c-di-GMP-binding domain (From Topology)	T: MshE c-di-GMP-binding domain	F: nfrB	ECOD (1.6)
J [auth P]	UNK_F_TYPE	e6ejfP2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
I [auth O]	nfrB	e6ejfO1	A: alpha arrays	X: MshE c-di-GMP-binding domain (From Topology)	H: MshE c-di-GMP-binding domain (From Topology)	T: MshE c-di-GMP-binding domain	F: nfrB	ECOD (1.6)
I [auth O]	UNK_F_TYPE	e6ejfO2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
H [auth N]	nfrB	e6ejfN1	A: alpha arrays	X: MshE c-di-GMP-binding domain (From Topology)	H: MshE c-di-GMP-binding domain (From Topology)	T: MshE c-di-GMP-binding domain	F: nfrB	ECOD (1.6)
H [auth N]	UNK_F_TYPE	e6ejfN2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
D [auth L]	nfrB	e6ejfL2	A: alpha arrays	X: MshE c-di-GMP-binding domain (From Topology)	H: MshE c-di-GMP-binding domain (From Topology)	T: MshE c-di-GMP-binding domain	F: nfrB	ECOD (1.6)
D [auth L]	UNK_F_TYPE	e6ejfL1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
C [auth K]	nfrB	e6ejfK2	A: alpha arrays	X: MshE c-di-GMP-binding domain (From Topology)	H: MshE c-di-GMP-binding domain (From Topology)	T: MshE c-di-GMP-binding domain	F: nfrB	ECOD (1.6)
C [auth K]	UNK_F_TYPE	e6ejfK1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
B [auth J]	nfrB	e6ejfJ1	A: alpha arrays	X: MshE c-di-GMP-binding domain (From Topology)	H: MshE c-di-GMP-binding domain (From Topology)	T: MshE c-di-GMP-binding domain	F: nfrB	ECOD (1.6)
B [auth J]	UNK_F_TYPE	e6ejfJ2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
L [auth R]	nfrB	e6ejfR2	A: alpha arrays	X: MshE c-di-GMP-binding domain (From Topology)	H: MshE c-di-GMP-binding domain (From Topology)	T: MshE c-di-GMP-binding domain	F: nfrB	ECOD (1.6)
L [auth R]	T2SSE_N	e6ejfR1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: T2SSE_N	ECOD (1.6)
K [auth Q]	nfrB	e6ejfQ2	A: alpha arrays	X: MshE c-di-GMP-binding domain (From Topology)	H: MshE c-di-GMP-binding domain (From Topology)	T: MshE c-di-GMP-binding domain	F: nfrB	ECOD (1.6)
K [auth Q]	T2SSE_N	e6ejfQ1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: T2SSE_N	ECOD (1.6)
G [auth M]	nfrB	e6ejfM2	A: alpha arrays	X: MshE c-di-GMP-binding domain (From Topology)	H: MshE c-di-GMP-binding domain (From Topology)	T: MshE c-di-GMP-binding domain	F: nfrB	ECOD (1.6)
G [auth M]	T2SSE_N	e6ejfM1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: T2SSE_N	ECOD (1.6)
F [auth I]	nfrB	e6ejfI2	A: alpha arrays	X: MshE c-di-GMP-binding domain (From Topology)	H: MshE c-di-GMP-binding domain (From Topology)	T: MshE c-di-GMP-binding domain	F: nfrB	ECOD (1.6)
F [auth I]	T2SSE_N	e6ejfI1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: T2SSE_N	ECOD (1.6)
E [auth H]	nfrB	e6ejfH1	A: alpha arrays	X: MshE c-di-GMP-binding domain (From Topology)	H: MshE c-di-GMP-binding domain (From Topology)	T: MshE c-di-GMP-binding domain	F: nfrB	ECOD (1.6)
E [auth H]	T2SSE_N	e6ejfH2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: T2SSE_N	ECOD (1.6)
A [auth G]	nfrB	e6ejfG2	A: alpha arrays	X: MshE c-di-GMP-binding domain (From Topology)	H: MshE c-di-GMP-binding domain (From Topology)	T: MshE c-di-GMP-binding domain	F: nfrB	ECOD (1.6)
A [auth G]	T2SSE_N	e6ejfG1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: T2SSE_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], R [auth F]	PF00437	Type II/IV secretion system protein (T2SSE)	Type II/IV secretion system protein	This entry contains both Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. Swiss:P07169 VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer ...	This entry contains both Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. Swiss:P07169 VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection [1]. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension [2]. The type II protein secretion system (T2SS) is a sophisticated multi-protein machinery containing 12-15 different proteins [3]. Historically, this system was described as the main terminal branch (MTB) of the general secretory pathway (GSP), but this nomenclature is now on obsolete [4].	Domain
B [auth J], C [auth K], D [auth L], H [auth N], I [auth O], B [auth J], C [auth K], D [auth L], H [auth N], I [auth O], J [auth P]	PF05157	MshEN domain (MshEN)	MshEN domain	This domain is found at the N-terminus of the Type II secretion secretion system protein E (GspE) and type IV pilus extensin ATPase PilB and near the C-terminus of the glycosyltransferase NfrB. A variant of this domain, called MshEN, binds cyclic di- ...	This domain is found at the N-terminus of the Type II secretion secretion system protein E (GspE) and type IV pilus extensin ATPase PilB and near the C-terminus of the glycosyltransferase NfrB. A variant of this domain, called MshEN, binds cyclic di-GMP [4,6,7], which modulates the activity of the respective protein. The structure of this domain is now known [1,2,4].	Domain
A [auth G], E [auth H], F [auth I], G [auth M], K [auth Q], A [auth G], E [auth H], F [auth I], G [auth M], K [auth Q], L [auth R]	PF05157	MshEN domain (MshEN)	MshEN domain	This domain is found at the N-terminus of the Type II secretion secretion system protein E (GspE) and type IV pilus extensin ATPase PilB and near the C-terminus of the glycosyltransferase NfrB. A variant of this domain, called MshEN, binds cyclic di- ...	This domain is found at the N-terminus of the Type II secretion secretion system protein E (GspE) and type IV pilus extensin ATPase PilB and near the C-terminus of the glycosyltransferase NfrB. A variant of this domain, called MshEN, binds cyclic di-GMP [4,6,7], which modulates the activity of the respective protein. The structure of this domain is now known [1,2,4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], R [auth F]	Type IV pilus assembly protein PilF	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity cation binding metal ion binding	-	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm
B [auth J], C [auth K], D [auth L], H [auth N], I [auth O], B [auth J], C [auth K], D [auth L], H [auth N], I [auth O], J [auth P]	Type IV pilus assembly protein PilF	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity cation binding metal ion binding	-	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm
A [auth G], E [auth H], F [auth I], G [auth M], K [auth Q], A [auth G], E [auth H], F [auth I], G [auth M], K [auth Q], L [auth R]	Type IV pilus assembly protein PilF	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity cation binding metal ion binding	-	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], R [auth F]	IPR001482	Type II/IV secretion system domain	Domain
M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], R [auth F]	IPR037257	Type II secretion system protein GspE, N-terminal superfamily	Homologous Superfamily
M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], R [auth F]	IPR007831	Type II secretion system protein GspE, N-terminal	Domain
M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], M [auth A], N [auth B], O [auth C], P [auth D], Q [auth E], R [auth F]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B [auth J], C [auth K], D [auth L], H [auth N], I [auth O], B [auth J], C [auth K], D [auth L], H [auth N], I [auth O], J [auth P]	IPR001482	Type II/IV secretion system domain	Domain
B [auth J], C [auth K], D [auth L], H [auth N], I [auth O], B [auth J], C [auth K], D [auth L], H [auth N], I [auth O], J [auth P]	IPR037257	Type II secretion system protein GspE, N-terminal superfamily	Homologous Superfamily
B [auth J], C [auth K], D [auth L], H [auth N], I [auth O], B [auth J], C [auth K], D [auth L], H [auth N], I [auth O], J [auth P]	IPR007831	Type II secretion system protein GspE, N-terminal	Domain
B [auth J], C [auth K], D [auth L], H [auth N], I [auth O], B [auth J], C [auth K], D [auth L], H [auth N], I [auth O], J [auth P]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth G], E [auth H], F [auth I], G [auth M], K [auth Q], A [auth G], E [auth H], F [auth I], G [auth M], K [auth Q], L [auth R]	IPR001482	Type II/IV secretion system domain	Domain
A [auth G], E [auth H], F [auth I], G [auth M], K [auth Q], A [auth G], E [auth H], F [auth I], G [auth M], K [auth Q], L [auth R]	IPR037257	Type II secretion system protein GspE, N-terminal superfamily	Homologous Superfamily
A [auth G], E [auth H], F [auth I], G [auth M], K [auth Q], A [auth G], E [auth H], F [auth I], G [auth M], K [auth Q], L [auth R]	IPR007831	Type II secretion system protein GspE, N-terminal	Domain
A [auth G], E [auth H], F [auth I], G [auth M], K [auth Q], A [auth G], E [auth H], F [auth I], G [auth M], K [auth Q], L [auth R]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily